Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KCV10_RS08890 Genome accession   NZ_CP073243
Coordinates   1921103..1921630 (+) Length   175 a.a.
NCBI ID   WP_019457873.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1916103..1926630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS08875 pilM 1918653..1919711 (+) 1059 WP_212512193.1 pilus assembly protein PilM Machinery gene
  KCV10_RS08880 pilN 1919711..1920355 (+) 645 WP_212512194.1 PilN domain-containing protein Machinery gene
  KCV10_RS08885 pilO 1920352..1921092 (+) 741 WP_212512195.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV10_RS08890 pilP 1921103..1921630 (+) 528 WP_019457873.1 pilus assembly protein PilP Machinery gene
  KCV10_RS08895 pilQ 1921692..1923818 (+) 2127 WP_212512196.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV10_RS08900 aroK 1923830..1924399 (+) 570 WP_004705195.1 shikimate kinase AroK -
  KCV10_RS08905 aroB 1924428..1925510 (+) 1083 WP_212512197.1 3-dehydroquinate synthase -
  KCV10_RS08910 - 1925526..1926400 (+) 875 Protein_1729 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19298.45 Da        Isoelectric Point: 9.4007

>NTDB_id=558452 KCV10_RS08890 WP_019457873.1 1921103..1921630(+) (pilP) [Acinetobacter seifertii strain S63-3]
MKIKQITLYALACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=558452 KCV10_RS08890 WP_019457873.1 1921103..1921630(+) (pilP) [Acinetobacter seifertii strain S63-3]
ATGAAAATTAAGCAAATTACTCTTTATGCTTTGGCTTGTGCTGCTCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
GAATAGTCGTGGTCAAATATTAGCTCTCATCCAAACACCAGATCATCAAGTTGAACGGGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATCGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

69.767

98.286

0.686