Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   L2Z44_RS00840 Genome accession   NZ_CP091333
Coordinates   172746..173261 (-) Length   171 a.a.
NCBI ID   WP_005109472.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167746..178261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS00815 (L2Z44_00815) - 168291..169934 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  L2Z44_RS00820 (L2Z44_00820) - 169927..170412 (+) 486 WP_000935252.1 DUF934 domain-containing protein -
  L2Z44_RS00825 (L2Z44_00825) - 170496..170849 (+) 354 WP_000457783.1 SMR family transporter -
  L2Z44_RS00830 (L2Z44_00830) - 170892..171335 (-) 444 WP_001176580.1 VOC family protein -
  L2Z44_RS00835 (L2Z44_00835) - 171462..172637 (-) 1176 WP_000129968.1 thiolase family protein -
  L2Z44_RS00840 (L2Z44_00840) fimT 172746..173261 (-) 516 WP_005109472.1 GspH/FimT family pseudopilin Machinery gene
  L2Z44_RS00845 (L2Z44_00845) omp38 173643..174674 (+) 1032 WP_075399933.1 outer membrane protein Omp38 -
  L2Z44_RS00850 (L2Z44_00850) - 174799..174957 (-) 159 WP_000692859.1 hypothetical protein -
  L2Z44_RS00855 (L2Z44_00855) - 174961..176166 (-) 1206 WP_005109475.1 RtcB family protein -
  L2Z44_RS00860 (L2Z44_00860) - 176444..177904 (-) 1461 WP_000004974.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19584.81 Da        Isoelectric Point: 8.4960

>NTDB_id=558451 L2Z44_RS00840 WP_005109472.1 172746..173261(-) (fimT) [Acinetobacter baumannii strain DSM30011-VUB]
MFKSPGFTIVELAITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NHVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=558451 L2Z44_RS00840 WP_005109472.1 172746..173261(-) (fimT) [Acinetobacter baumannii strain DSM30011-VUB]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCGCTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCACGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427