Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KCV10_RS08885 Genome accession   NZ_CP073243
Coordinates   1920352..1921092 (+) Length   246 a.a.
NCBI ID   WP_212512195.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1915352..1926092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS08870 ponA 1915936..1918491 (-) 2556 WP_212512192.1 penicillin-binding protein PBP1a -
  KCV10_RS08875 pilM 1918653..1919711 (+) 1059 WP_212512193.1 pilus assembly protein PilM Machinery gene
  KCV10_RS08880 pilN 1919711..1920355 (+) 645 WP_212512194.1 PilN domain-containing protein Machinery gene
  KCV10_RS08885 pilO 1920352..1921092 (+) 741 WP_212512195.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV10_RS08890 pilP 1921103..1921630 (+) 528 WP_019457873.1 pilus assembly protein PilP Machinery gene
  KCV10_RS08895 pilQ 1921692..1923818 (+) 2127 WP_212512196.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV10_RS08900 aroK 1923830..1924399 (+) 570 WP_004705195.1 shikimate kinase AroK -
  KCV10_RS08905 aroB 1924428..1925510 (+) 1083 WP_212512197.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.46 Da        Isoelectric Point: 4.8331

>NTDB_id=558451 KCV10_RS08885 WP_212512195.1 1920352..1921092(+) (pilO) [Acinetobacter seifertii strain S63-3]
MSQDELQELSLEQAASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLHAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEVFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPTKDSKSDIPVLNYSIKAKTYRYVEATDTADQSTQAPTTPASTS
TTAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=558451 KCV10_RS08885 WP_212512195.1 1920352..1921092(+) (pilO) [Acinetobacter seifertii strain S63-3]
ATGAGTCAAGATGAACTTCAAGAGTTATCATTAGAGCAAGCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAACAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCCATATCTGTAAAAATTACTTGTTGGATTTTTATTT
TCTTTGCTGTATTAGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACACGCAATTGATAATGCTCAAGCTCAGGAA
AGTAACTTGTTAAACGAATTTCGAGAAAAAGATTCGAAATTACGTAACTTGCAACAGTATCAAGTCCAACTTCAAGAGAT
GCAGGCAAATTTTAATCAGCAATTAGAGCAGTTGCCTAAAGAAACTGAGATTCCTAGTTTGGTTGAAGACATTAATTTAA
CAGGTGTTAACTCGGGATTAAAATTTAAAAATATTCGCTTGGAAAATGAAGTTAAACAGGAAGTCTTTATTGAACAACCG
ATTGCGATAGAAGCCACAGGTGATTATCACGCCTTTGGAGCTTTTGTGAGTAGTATTGCTGCGTTGCCGCGTATCGTAAC
CATGCATGACTTTACTGTTGATGTATCTCCAACTAAAGACAGCAAGTCTGATATTCCTGTATTGAATTATTCTATTAAAG
CGAAAACCTATCGCTATGTAGAAGCAACAGATACAGCGGATCAATCGACCCAAGCTCCAACAACACCTGCTTCAACTAGC
ACTACTGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

91.463

100

0.915
  comO Acinetobacter baylyi ADP1

68.571

99.593

0.683