Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KCV10_RS08875 Genome accession   NZ_CP073243
Coordinates   1918653..1919711 (+) Length   352 a.a.
NCBI ID   WP_212512193.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1913653..1924711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS08860 - 1914760..1915092 (+) 333 WP_212512190.1 hypothetical protein -
  KCV10_RS08865 - 1915095..1915919 (+) 825 WP_212512191.1 putative RNA methyltransferase -
  KCV10_RS08870 ponA 1915936..1918491 (-) 2556 WP_212512192.1 penicillin-binding protein PBP1a -
  KCV10_RS08875 pilM 1918653..1919711 (+) 1059 WP_212512193.1 pilus assembly protein PilM Machinery gene
  KCV10_RS08880 pilN 1919711..1920355 (+) 645 WP_212512194.1 PilN domain-containing protein Machinery gene
  KCV10_RS08885 pilO 1920352..1921092 (+) 741 WP_212512195.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV10_RS08890 pilP 1921103..1921630 (+) 528 WP_019457873.1 pilus assembly protein PilP Machinery gene
  KCV10_RS08895 pilQ 1921692..1923818 (+) 2127 WP_212512196.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV10_RS08900 aroK 1923830..1924399 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38992.55 Da        Isoelectric Point: 4.4582

>NTDB_id=558449 KCV10_RS08875 WP_212512193.1 1918653..1919711(+) (pilM) [Acinetobacter seifertii strain S63-3]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAINLANPQTKNAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANSNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGVLDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLDE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVIIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=558449 KCV10_RS08875 WP_212512193.1 1918653..1919711(+) (pilM) [Acinetobacter seifertii strain S63-3]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGCGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTTGAAAGCTATGCTTTGATGCCTTTACCTGAAAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAAGCAGTAGCGGAAGCATTGGAAAGGGCGATTAACTTAGCAAATCCCCAAACCAAAAATGCTGCAATT
GCTGTTCCTACATCGACAGTTATTCATAAAACTATCGAGATGGATGCGGATATGAGCGATGATGAACGTGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTGGATGAGGTGAGCCTAGATTTTGAGGTTCTACCTGACCGTCTCG
CGAATTCAAATCGTGTAAATGTACTCTTAGTCGCAACAAGAACGGAAAACGTAGAAACGCGCGTTGAGGTTCTTGAGTTG
GCAGATTTAAATCCTAAATTGGCTGATGTTGAAAGTTATGCTGTTGAGCGCGCATTTAGTGTGTTTGCTGATAGCTTACC
TATGGGTGCAAATACGATAGGGGTTTTAGATATTGGTCATACCATGACAACATTGTCTGTCATGCAAAACGGCAAAATTA
TTTATACCCGTGAGCAAGTTTTTGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGACGAA
GCAAGCCGAGCGAAAAAAGATCGTTCTTTACCAGATGACTATGAAATTGAAGTACTAGATCCGTTTCTAGATGCCGTAGT
TCAGCAAGCGGCTCGCTCTTTACAATTCTTCTTTTCTTCATCTCAGTTTAACGAAATAGACCATATTTTGCTTGCAGGCG
GAAATGCGAATATTCCAGGTCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTATCGTGTCATTATTGCCAATCCATTTTTA
CAGATGGGTTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCCTCATCTTTAATGGTGGCGTGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

98.011

100

0.98
  comM Acinetobacter nosocomialis M2

97.727

100

0.977
  comM Acinetobacter baylyi ADP1

80.966

100

0.81
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423