Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCV10_RS08880 Genome accession   NZ_CP073243
Coordinates   1919711..1920355 (+) Length   214 a.a.
NCBI ID   WP_212512194.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914711..1925355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS08860 - 1914760..1915092 (+) 333 WP_212512190.1 hypothetical protein -
  KCV10_RS08865 - 1915095..1915919 (+) 825 WP_212512191.1 putative RNA methyltransferase -
  KCV10_RS08870 ponA 1915936..1918491 (-) 2556 WP_212512192.1 penicillin-binding protein PBP1a -
  KCV10_RS08875 pilM 1918653..1919711 (+) 1059 WP_212512193.1 pilus assembly protein PilM Machinery gene
  KCV10_RS08880 pilN 1919711..1920355 (+) 645 WP_212512194.1 PilN domain-containing protein Machinery gene
  KCV10_RS08885 pilO 1920352..1921092 (+) 741 WP_212512195.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV10_RS08890 pilP 1921103..1921630 (+) 528 WP_019457873.1 pilus assembly protein PilP Machinery gene
  KCV10_RS08895 pilQ 1921692..1923818 (+) 2127 WP_212512196.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV10_RS08900 aroK 1923830..1924399 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24050.44 Da        Isoelectric Point: 6.4906

>NTDB_id=558450 KCV10_RS08880 WP_212512194.1 1919711..1920355(+) (pilN) [Acinetobacter seifertii strain S63-3]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQTQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=558450 KCV10_RS08880 WP_212512194.1 1919711..1920355(+) (pilN) [Acinetobacter seifertii strain S63-3]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTAGTTGTTTTGGGGATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAACTAGATGATCAAACGCAGGCAA
ACCAACTTATTACAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAACAGCGTGATGCC
ATTATTGAGCGCATGAAATTGATTCAAGGTTTACAGAGTCAGCGTCCAGTAGTGGTAAGACTGGTTGATGAGTTAGTTAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATCATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.523

100

0.925
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696