Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   L2Z44_RS00980 Genome accession   NZ_CP091333
Coordinates   201937..202299 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196937..207299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS00965 (L2Z44_00965) - 199431..200549 (-) 1119 WP_075399942.1 efflux RND transporter periplasmic adaptor subunit -
  L2Z44_RS00970 (L2Z44_00970) - 200609..201247 (-) 639 WP_031949909.1 hypothetical protein -
  L2Z44_RS00975 (L2Z44_00975) pilG 201530..201913 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  L2Z44_RS00980 (L2Z44_00980) pilH 201937..202299 (+) 363 WP_000101096.1 response regulator Machinery gene
  L2Z44_RS00985 (L2Z44_00985) - 202360..202896 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  L2Z44_RS00990 (L2Z44_00990) - 202943..205021 (+) 2079 WP_075399943.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=558453 L2Z44_RS00980 WP_000101096.1 201937..202299(+) (pilH) [Acinetobacter baumannii strain DSM30011-VUB]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=558453 L2Z44_RS00980 WP_000101096.1 201937..202299(+) (pilH) [Acinetobacter baumannii strain DSM30011-VUB]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392