Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCV10_RS06190 Genome accession   NZ_CP073243
Coordinates   1343429..1344916 (+) Length   495 a.a.
NCBI ID   WP_212512012.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1338429..1349916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS06165 ribD 1339344..1340429 (-) 1086 WP_212512010.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  KCV10_RS06170 nrdR 1340445..1340903 (-) 459 WP_004699275.1 transcriptional regulator NrdR -
  KCV10_RS06175 - 1341064..1342461 (-) 1398 WP_212512011.1 ammonium transporter -
  KCV10_RS06180 glnK 1342519..1342857 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  KCV10_RS06185 - 1343136..1343363 (+) 228 WP_002048939.1 accessory factor UbiK family protein -
  KCV10_RS06190 comM 1343429..1344916 (+) 1488 WP_212512012.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCV10_RS06195 - 1345018..1345563 (+) 546 WP_077165250.1 NADPH-dependent FMN reductase -
  KCV10_RS06200 - 1345588..1347021 (-) 1434 WP_212512013.1 PLP-dependent aminotransferase family protein -
  KCV10_RS06205 - 1347133..1347909 (+) 777 WP_212512014.1 aldolase -
  KCV10_RS06210 - 1347925..1348803 (+) 879 WP_212512015.1 dihydrodipicolinate synthase family protein -
  KCV10_RS06215 - 1348845..1349669 (-) 825 WP_198071754.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54481.33 Da        Isoelectric Point: 7.5370

>NTDB_id=558443 KCV10_RS06190 WP_212512012.1 1343429..1344916(+) (comM) [Acinetobacter seifertii strain S63-3]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSNAIPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPTE
DSTTVRQRVISAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=558443 KCV10_RS06190 WP_212512012.1 1343429..1344916(+) (comM) [Acinetobacter seifertii strain S63-3]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTGCATGCACCTCTCATAGAAGTAGAGGTGCACGTGAGTCA
AGGCTTACCTTCTCTAACGATTGTAGGGCTTGCTGAAGCAGCAGTTAGGGAGAGTAAGGACAGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGACCAGTTTCAGGCGCTTTAACTTTGGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAGGATATTAGTCACTTACCAAATCTTGAGTGTTATCCGGTGAGCCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACTAAGCTATCTCAGGTGCAATCATCTTCCCGCTCAAATGCCATACCGTA
TAAATTTGACCTTGCAGATGTAAAAGGCCAGCTACGCCCGCGCCGTGCACTAGAAATTGCTGCTGCGGGAGGGCATTCCC
TGCTCTTTAAAGGACCACCTGGTACAGGTAAGACTTTACTCGCCTCACGCCTTCCTTCAATTTTACCGCCACTATCTACT
CAAGAAACGCTTGAAGTTGCTAGTATTTATTCTATTTCAAATACGCCACATACTTTTGGACAGCGTCCTTTTCGTGCACC
ACATCATACTGCATCCGCAATTGCACTAGTTGGGGGCGGCTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GTGTTCTATTCTTAGATGAATTGCCCGAGTTTGATCGTAAAGTATTAGAAGTTTTACGCCAGCCACTTGAGTCAAAAGAA
ATTATTATTTCACGAGCAGCGCGGCAAATTACCTATCCTGCCAACTTCCAACTGATTGCAGCCATGAACCCCTGCCCATG
TGGTTATGCATTTAATCAAGACAGTCGTTGTCAGTGCTCACCCGAGAGTATTAAACGTTATCAGAACCGTATATCGGGCC
CGTTACTTGACCGTATCGATTTACATATTGATGTGCCACCTTTAAAAGCTCAGGAACTGCAAGACCCAACGCCTACTGAA
GATTCTACAACTGTGCGACAACGTGTGATTTCTGCTTATGAACAACAAATGCAAAGACAAGATTGTTTGAATCAGGCGCT
TTCACCGAAACAACTTGAGCAATATGCTGTCCTTGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCGGCTCGTGCTTATCATCGTGTTTTACGAGTCGCGCGAACTATTGCTGATTTAGCACAAAGTGAGATGATTCAA
AGTCCTCATCTTACAGAAGCACTCTCCTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.613

100

0.517
  comM Glaesserella parasuis strain SC1401

50.8

100

0.513
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477