Detailed information    

insolico Bioinformatically predicted

Overview


Name   comC   Type   Machinery gene
Locus tag   KCV09_RS13440 Genome accession   NZ_CP073241
Coordinates   2930915..2935276 (+) Length   1453 a.a.
NCBI ID   WP_212515271.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2925915..2940276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13405 rpoZ 2926104..2926385 (-) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -
  KCV09_RS13410 gmk 2926454..2927077 (-) 624 WP_025095725.1 guanylate kinase -
  KCV09_RS13415 ispH 2927213..2928163 (+) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCV09_RS13420 - 2928284..2928730 (+) 447 WP_004945018.1 GspH/FimT family pseudopilin -
  KCV09_RS13425 pilV 2928727..2929263 (+) 537 WP_025095723.1 type IV pilus modification protein PilV Machinery gene
  KCV09_RS13430 comB 2929264..2930232 (+) 969 WP_212515270.1 PilW family protein Machinery gene
  KCV09_RS13435 pilX 2930229..2930897 (+) 669 WP_025095721.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KCV09_RS13440 comC 2930915..2935276 (+) 4362 WP_212515271.1 PilC/PilY family type IV pilus protein Machinery gene
  KCV09_RS13445 comE 2935342..2935815 (+) 474 WP_212515272.1 type IV pilin protein Machinery gene
  KCV09_RS13450 comF 2935815..2936249 (+) 435 WP_212515273.1 type IV pilin protein Machinery gene
  KCV09_RS13455 rpsP 2936391..2936648 (+) 258 WP_004934313.1 30S ribosomal protein S16 -
  KCV09_RS13460 rimM 2936666..2937214 (+) 549 WP_004934317.1 ribosome maturation factor RimM -
  KCV09_RS13465 trmD 2937263..2937997 (+) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KCV09_RS13470 rplS 2938207..2938578 (+) 372 WP_004934323.1 50S ribosomal protein L19 -
  KCV09_RS13475 - 2938645..2939616 (-) 972 WP_151814893.1 triacylglycerol lipase -

Sequence


Protein


Download         Length: 1453 a.a.        Molecular weight: 157074.74 Da        Isoelectric Point: 7.9077

>NTDB_id=558419 KCV09_RS13440 WP_212515271.1 2930915..2935276(+) (comC) [Acinetobacter soli strain M3-1-68]
MKNKKSKRFNPLLGTATPQHHRMLCTAMMSVSLIIACNAQASDVEVYHQGAQFDKRLMLMVDQSRTMGGAGALDLLKEYP
ICVGKGVSNILGSGGGLGLLGDKDALELVTNTVGAVDQVALQGLLGGSLDPLLKITTESPSSKYNYARNYCTVVTTDLVV
KTLDGLLKPLLGATGLDAKSYIENTCDFQANVKLLNSVSAVGVYRCYDKLSRVKNALTDVLLGNSSTGLKPLPDNVSVGI
SVMPVDVMTNDRAGRILAPACKLSTTRASDTNFRCFEKTYSGSATTYRNYLVEKIAGNIQSKGDFNLQNVLVIVPKLIAA
LVGDIFSKLWSILSNPVKGLSELLEFKGTASTVNDLLKTLGLAGNVPTASTYAETGAYLMGTTTKGTGARQIAMRIIPVK
ILFLPLLGWYDYKCDKYGTDSWQSDGVTCKDDAWQYKSGGISTTNLIQVNDDLVSSLISDGVVGGLLNGVVGNILGIKVS
EKHLYYGYDSQADIEYSGFSNSVDSSKRSTTFYRAPTDTPQCNANGIMVITGGVPNITPTVTDALLKQGAEGLGTQNAIE
RLMGRSLNTSATDLSKLDLSNVFQCDASAGLKSTTLSSRDYATWSCIGNYTKKLLDKNITTGVIGVGREFTTIPSTTDSA
QLEASMTGVNNSLLGQIVPNLLKDTLNVLLGGTLVNGLTSLLGNVFPTDAEDVKNLARWGVLGKGGWYNSASSENIANSI
YNFYANLGISNRETFLGVPVVPTDPLTPYNLDNYVFQNMFVPDDKQTWFGNVKKYLADTGETIQTKTITDVWSNSNIQST
KTSILTGGFADKLPTATSSSASSRQLYVNRACITKDKKYDVSASIGLIGNDYYTKLCESQSKDPRRSDLMNLLGYQIQTT
NNQESLIAKPEYKKVGMVLHSSPIKITQSATIKNDGSLTRDDYLVFGTVQGLLHVVNASTGVEKFAFLPNELLENAKQRK
AFTGTNLEGHDNFNNMQYGIDAPWTAYSEYVWNTKDGKLTVGKSATDATCIKDGVSTGACGKQYLYGGLRMGGRSYYALD
LSLWDDQTKPSLKFYIDPASGKVYSSTTPEGKSFDAIKYMGQSWSKPTVAWVNWQGKRKLVMFVGGGYDAGGTDGNANNG
GYEQVSYAQSNKIGSGVYMFDAENGDLLWWASNLATTANTGATMALKTNMQYSVVSRINAVDRNGDGLVDHLYFGDLGGQ
LWRVDINNGSNPQQFAQAAQLLDLQNNKPSDLTDANLRFYEAPIFSVYGYGANSLAVLSIATTNRSLPISDQSAGVVFNL
FDNDVTQVSFSTRDMAANNKNLVAYAQLPKYGELTMVNRPQYGWYAKLSNQQKVMDEPVVINKNLYVSIFDPIAQEGRVA
DCSIGVQGLSSVRRFCLPYGVCEKSADLTTTLKLGKGILPVTIGAGTTSNGVTTRQILGGSSTDRDSTKDVLSSTQTTRR
QIVPLKWYEQYTP

Nucleotide


Download         Length: 4362 bp        

>NTDB_id=558419 KCV09_RS13440 WP_212515271.1 2930915..2935276(+) (comC) [Acinetobacter soli strain M3-1-68]
ATGAAAAACAAGAAATCTAAAAGATTTAATCCCTTACTAGGTACCGCTACACCTCAGCATCATCGGATGCTGTGTACAGC
TATGATGAGCGTTTCACTGATAATTGCATGCAACGCTCAGGCCAGTGATGTCGAGGTTTATCATCAAGGAGCACAATTTG
ATAAGCGTTTAATGCTGATGGTCGATCAGTCCCGCACCATGGGGGGAGCAGGAGCACTCGATTTATTAAAAGAATATCCT
ATTTGTGTGGGGAAAGGTGTCTCTAATATTTTAGGTTCAGGGGGTGGGCTGGGGCTGCTAGGCGATAAAGATGCGCTTGA
GTTGGTCACCAATACCGTAGGTGCAGTCGATCAGGTGGCTTTACAGGGCTTACTGGGCGGGAGTCTGGATCCGCTGTTAA
AGATCACCACAGAGTCACCGAGCAGTAAATACAACTATGCACGTAATTACTGTACCGTAGTCACCACAGATTTGGTGGTA
AAAACACTCGATGGCTTATTAAAACCGCTGCTGGGTGCAACCGGGCTAGACGCCAAAAGTTATATCGAAAATACCTGTGA
TTTTCAGGCCAATGTTAAACTGCTGAACAGTGTTTCTGCGGTGGGTGTATATCGATGCTATGACAAACTTTCGCGGGTCA
AAAATGCCTTAACGGACGTATTGCTTGGAAATAGTAGTACAGGGCTCAAACCTCTGCCAGACAATGTCAGTGTCGGGATA
TCGGTCATGCCGGTTGATGTTATGACCAATGATCGTGCGGGACGTATTTTGGCGCCTGCTTGTAAGCTGTCGACCACTCG
AGCCAGTGATACCAATTTCCGTTGTTTTGAAAAGACCTACTCAGGGAGTGCCACCACGTATCGTAACTATCTAGTCGAAA
AAATTGCAGGAAATATTCAGTCCAAAGGCGATTTTAATCTACAAAATGTATTGGTTATTGTGCCGAAACTGATTGCAGCG
TTGGTGGGTGATATCTTTAGTAAACTCTGGAGCATTCTTTCAAATCCAGTAAAAGGTTTGTCTGAGTTATTAGAATTTAA
GGGTACAGCCAGCACCGTCAATGATTTACTCAAAACTCTTGGACTCGCAGGGAATGTTCCAACCGCCAGTACCTATGCAG
AGACGGGTGCCTATTTAATGGGAACCACTACCAAGGGTACTGGTGCTAGACAAATAGCAATGAGAATTATTCCAGTAAAA
ATTCTATTTCTTCCACTATTAGGCTGGTACGATTATAAATGTGATAAATACGGAACAGATAGCTGGCAATCTGATGGTGT
AACGTGTAAGGATGATGCTTGGCAGTATAAGTCTGGTGGAATATCAACAACTAATCTTATACAGGTAAATGATGATCTGG
TCAGCTCCCTTATCAGTGATGGAGTGGTAGGGGGGCTTTTAAATGGTGTGGTTGGTAACATCTTGGGAATCAAGGTCTCA
GAGAAACATCTCTACTATGGCTATGATTCACAAGCTGATATTGAATATAGCGGCTTTAGTAACTCGGTCGATTCCAGCAA
ACGTTCTACTACATTTTATCGCGCACCGACAGACACACCGCAATGTAATGCTAACGGTATTATGGTGATTACTGGTGGCG
TACCAAATATCACCCCAACGGTTACCGATGCACTGCTTAAGCAAGGCGCGGAAGGGCTGGGCACACAAAATGCGATTGAG
CGTTTGATGGGTCGTTCACTCAATACTTCGGCCACAGACTTGTCGAAGCTCGACCTCAGTAACGTTTTTCAGTGTGATGC
ATCGGCAGGATTAAAATCGACCACTTTAAGTAGCCGTGATTATGCCACGTGGAGCTGCATTGGTAATTACACCAAAAAGC
TACTCGATAAAAATATCACCACGGGTGTGATTGGCGTTGGGCGTGAATTTACCACGATTCCAAGCACTACAGATTCAGCC
CAGCTTGAAGCATCTATGACGGGTGTAAATAATTCGCTATTGGGTCAGATTGTTCCGAATTTATTAAAGGACACCTTAAA
CGTATTGCTTGGTGGTACGTTGGTGAATGGTTTAACCAGTTTGCTTGGCAATGTATTTCCAACCGATGCCGAGGATGTCA
AAAATCTGGCACGGTGGGGCGTACTGGGTAAAGGGGGCTGGTATAACTCAGCCAGCTCAGAAAATATTGCCAACAGTATT
TATAACTTTTATGCCAATTTGGGCATTAGTAATCGGGAAACCTTTTTAGGCGTACCTGTGGTGCCAACAGATCCACTTAC
CCCATACAATCTTGATAACTATGTTTTTCAAAACATGTTTGTTCCCGACGACAAACAAACTTGGTTTGGGAATGTAAAAA
AATATTTGGCCGATACAGGTGAAACCATACAGACCAAAACCATCACCGATGTCTGGAGTAATAGCAACATACAATCCACC
AAAACCAGTATTTTAACGGGTGGGTTTGCAGACAAATTACCTACAGCGACCAGTAGCAGTGCATCTAGCCGGCAGTTATA
CGTGAATCGCGCGTGTATCACGAAAGATAAAAAATATGATGTTTCCGCTTCAATTGGGCTGATTGGAAACGACTACTATA
CCAAGCTCTGCGAAAGTCAAAGTAAAGACCCGCGTCGTAGCGATTTGATGAACCTGCTGGGCTATCAAATTCAAACCACC
AATAATCAAGAAAGTCTGATTGCCAAACCTGAATATAAAAAAGTCGGGATGGTGCTTCATTCATCGCCAATCAAAATTAC
CCAGTCGGCTACCATCAAAAATGATGGTTCATTGACACGTGATGATTATTTGGTATTTGGTACCGTGCAAGGGCTTTTAC
ATGTGGTCAATGCCAGTACAGGTGTAGAAAAATTTGCATTTTTACCCAATGAGCTACTTGAAAATGCCAAGCAGCGTAAA
GCCTTTACAGGTACAAATCTTGAGGGACACGACAACTTTAACAATATGCAATACGGCATTGATGCGCCGTGGACCGCCTA
CAGTGAATACGTGTGGAACACTAAAGATGGCAAACTCACTGTTGGTAAGTCGGCCACAGATGCAACCTGTATAAAAGATG
GCGTCTCGACGGGCGCTTGCGGTAAGCAATACCTTTATGGTGGATTACGTATGGGTGGACGCAGTTATTATGCCTTGGAT
TTGAGCCTATGGGATGATCAAACCAAACCAAGCTTAAAGTTCTATATTGATCCTGCTTCTGGCAAAGTTTATTCATCGAC
CACTCCAGAAGGAAAAAGCTTCGATGCCATCAAGTACATGGGGCAAAGCTGGTCGAAACCAACCGTGGCATGGGTGAACT
GGCAGGGCAAACGCAAATTGGTCATGTTTGTGGGTGGTGGCTACGATGCAGGTGGAACCGATGGTAATGCCAATAATGGC
GGATACGAACAGGTCAGTTACGCTCAGAGCAATAAGATTGGTTCGGGTGTGTACATGTTTGATGCCGAAAATGGCGATCT
GCTCTGGTGGGCCAGCAATTTGGCCACCACAGCCAATACCGGTGCCACCATGGCCCTGAAAACCAACATGCAATATAGCG
TCGTCAGCCGGATCAATGCAGTAGATCGAAATGGTGATGGTCTGGTCGATCATTTGTACTTTGGTGATTTGGGCGGACAA
CTCTGGCGTGTCGATATTAATAACGGCAGTAATCCTCAACAGTTTGCACAGGCAGCACAGTTACTCGATCTGCAAAACAA
TAAACCAAGTGATTTAACCGATGCCAATTTACGTTTTTATGAAGCACCTATTTTTAGTGTGTATGGATATGGCGCCAATT
CACTTGCTGTGTTGAGTATTGCAACCACTAACCGCAGTTTACCGATTAGTGATCAAAGTGCCGGGGTGGTATTTAATCTT
TTCGACAACGATGTCACACAGGTGAGTTTTAGCACCCGTGATATGGCAGCAAACAATAAAAATTTAGTCGCTTATGCACA
ATTGCCAAAATATGGGGAGCTGACCATGGTCAATCGTCCGCAATATGGTTGGTATGCCAAATTAAGCAACCAGCAAAAGG
TGATGGATGAACCTGTGGTCATCAATAAAAACCTGTATGTGAGTATTTTTGATCCGATTGCACAAGAAGGACGTGTGGCA
GATTGCTCAATTGGTGTGCAAGGTTTGAGTAGTGTCCGTCGCTTTTGTCTGCCATATGGTGTGTGCGAAAAGTCGGCTGA
CCTGACAACAACACTTAAACTTGGAAAAGGCATTTTACCCGTGACGATTGGCGCTGGTACCACCAGCAATGGCGTAACGA
CCCGACAAATCTTGGGGGGAAGTTCAACCGATCGTGACTCGACCAAAGATGTGCTCTCAAGTACCCAAACCACGCGGCGT
CAAATTGTGCCATTAAAATGGTATGAACAGTACACCCCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Acinetobacter baylyi ADP1

79.444

99.105

0.787