Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   KCV09_RS13430 Genome accession   NZ_CP073241
Coordinates   2929264..2930232 (+) Length   322 a.a.
NCBI ID   WP_212515270.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2924264..2935232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13405 rpoZ 2926104..2926385 (-) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -
  KCV09_RS13410 gmk 2926454..2927077 (-) 624 WP_025095725.1 guanylate kinase -
  KCV09_RS13415 ispH 2927213..2928163 (+) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCV09_RS13420 - 2928284..2928730 (+) 447 WP_004945018.1 GspH/FimT family pseudopilin -
  KCV09_RS13425 pilV 2928727..2929263 (+) 537 WP_025095723.1 type IV pilus modification protein PilV Machinery gene
  KCV09_RS13430 comB 2929264..2930232 (+) 969 WP_212515270.1 PilW family protein Machinery gene
  KCV09_RS13435 pilX 2930229..2930897 (+) 669 WP_025095721.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34850.48 Da        Isoelectric Point: 8.3453

>NTDB_id=558417 KCV09_RS13430 WP_212515270.1 2929264..2930232(+) (comB) [Acinetobacter soli strain M3-1-68]
MTRLHQAGFTLIELMVAITLGLLITAAAIQLYLTSITSFNVQKAMSNIQDSASFGVNYILDDVRKANLSASSAYINDQQA
NAGLLLTASNVSDQVSGKYLLTLAETALTKSAVGDSNVDQKSDQLTIRYQATQSDYDCTGKTLAAGTYVAQRYFVGSDKA
LRCVADQYMRNGNTITAVDGKPKTTLDLSGAGQIIIPSVDYMRIKVGYVKGALNNPTALNYVSVADYLDTAKTPAMTKNI
DGISQQIKPYINVIQIGLLVQSNETAGNDVNVRNRNKKTFDVLGQSVALNSTNQDTRLRQVVTQTISLRNAMGWVEEGYV
TQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=558417 KCV09_RS13430 WP_212515270.1 2929264..2930232(+) (comB) [Acinetobacter soli strain M3-1-68]
ATGACCCGATTACATCAGGCCGGATTTACACTAATTGAACTGATGGTAGCCATTACGCTGGGGCTTTTGATTACAGCGGC
AGCCATTCAGCTGTACCTCACCAGTATCACCAGTTTTAATGTGCAAAAAGCCATGTCGAATATTCAAGACAGTGCCAGTT
TTGGGGTGAACTATATTTTAGATGATGTTCGAAAGGCAAACTTGAGCGCATCATCTGCATATATCAACGATCAACAAGCA
AATGCGGGATTGCTTCTGACTGCAAGTAACGTCAGTGATCAAGTGAGTGGAAAATACTTATTAACGCTTGCCGAGACGGC
ACTGACCAAAAGCGCAGTTGGAGACAGTAATGTCGATCAAAAAAGTGATCAGCTTACGATTCGTTATCAGGCAACGCAAA
GCGACTATGACTGTACCGGCAAAACCCTTGCCGCAGGTACCTATGTGGCTCAGCGATATTTTGTTGGTAGTGACAAAGCG
TTGCGCTGTGTGGCCGATCAATATATGCGAAATGGAAACACGATAACCGCAGTAGATGGCAAGCCAAAAACCACACTGGA
TTTGTCTGGCGCGGGGCAAATTATTATTCCCTCGGTCGATTATATGCGCATTAAAGTGGGTTATGTGAAAGGCGCTTTGA
ATAATCCAACAGCGCTCAATTACGTGTCTGTGGCAGATTATCTCGACACCGCAAAAACACCCGCAATGACCAAAAATATT
GATGGTATCTCACAGCAAATCAAGCCATACATCAATGTGATTCAAATTGGCTTACTGGTGCAGTCAAATGAAACAGCAGG
CAATGATGTAAACGTTAGAAATCGTAATAAAAAGACTTTTGATGTGTTGGGGCAGTCGGTTGCATTAAACAGTACAAATC
AAGATACACGATTGCGTCAGGTAGTGACTCAGACCATTTCATTAAGAAATGCCATGGGTTGGGTGGAAGAGGGGTATGTC
ACACAATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(153-310)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

78.549

98.447

0.773