Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KCV09_RS13425 Genome accession   NZ_CP073241
Coordinates   2928727..2929263 (+) Length   178 a.a.
NCBI ID   WP_025095723.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2923727..2934263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13405 rpoZ 2926104..2926385 (-) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -
  KCV09_RS13410 gmk 2926454..2927077 (-) 624 WP_025095725.1 guanylate kinase -
  KCV09_RS13415 ispH 2927213..2928163 (+) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCV09_RS13420 - 2928284..2928730 (+) 447 WP_004945018.1 GspH/FimT family pseudopilin -
  KCV09_RS13425 pilV 2928727..2929263 (+) 537 WP_025095723.1 type IV pilus modification protein PilV Machinery gene
  KCV09_RS13430 comB 2929264..2930232 (+) 969 WP_212515270.1 PilW family protein Machinery gene
  KCV09_RS13435 pilX 2930229..2930897 (+) 669 WP_025095721.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18929.37 Da        Isoelectric Point: 8.2184

>NTDB_id=558416 KCV09_RS13425 WP_025095723.1 2928727..2929263(+) (pilV) [Acinetobacter soli strain M3-1-68]
MKLAGPQRGVGIVEVMVALLLLAIGVLGFTALQLRAVSASMEAGNQVAALNIARDLTERMRANPQATQCKLYHTEGSINS
STKAYTKASNCATTVSSQASAQATSDLQYIYNQTTNSGMSVIVNTCPNASNAGTNLGRQCIYVAWDKTAQSFSSSETCYK
NGATSYERNATCIFLEAY

Nucleotide


Download         Length: 537 bp        

>NTDB_id=558416 KCV09_RS13425 WP_025095723.1 2928727..2929263(+) (pilV) [Acinetobacter soli strain M3-1-68]
ATGAAGCTTGCAGGGCCTCAACGTGGTGTCGGTATAGTGGAAGTGATGGTGGCGTTGTTGCTACTGGCCATCGGTGTGCT
TGGATTTACAGCGCTTCAGTTGCGTGCGGTGAGTGCCAGTATGGAAGCAGGCAATCAAGTGGCTGCGCTCAATATTGCAC
GAGACCTAACCGAGCGTATGCGTGCCAACCCTCAAGCCACACAATGTAAGCTGTATCACACAGAAGGTTCTATTAACAGC
TCAACAAAGGCCTATACCAAAGCCTCTAACTGCGCCACAACTGTGAGTAGTCAGGCCAGTGCCCAAGCCACCAGTGATTT
ACAATATATTTATAACCAAACCACAAATTCAGGTATGAGCGTTATTGTGAATACCTGCCCCAATGCCAGCAATGCAGGAA
CAAATTTGGGGCGTCAATGCATTTATGTGGCATGGGATAAAACCGCACAAAGTTTTAGCAGTTCAGAGACATGCTACAAA
AATGGTGCCACCAGTTATGAGCGCAATGCGACGTGTATTTTTCTGGAGGCCTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

78.488

96.629

0.758
  pilV Acinetobacter baumannii D1279779

37.838

100

0.393