Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KCV09_RS13450 Genome accession   NZ_CP073241
Coordinates   2935815..2936249 (+) Length   144 a.a.
NCBI ID   WP_212515273.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2930815..2941249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13440 comC 2930915..2935276 (+) 4362 WP_212515271.1 PilC/PilY family type IV pilus protein Machinery gene
  KCV09_RS13445 comE 2935342..2935815 (+) 474 WP_212515272.1 type IV pilin protein Machinery gene
  KCV09_RS13450 comF 2935815..2936249 (+) 435 WP_212515273.1 type IV pilin protein Machinery gene
  KCV09_RS13455 rpsP 2936391..2936648 (+) 258 WP_004934313.1 30S ribosomal protein S16 -
  KCV09_RS13460 rimM 2936666..2937214 (+) 549 WP_004934317.1 ribosome maturation factor RimM -
  KCV09_RS13465 trmD 2937263..2937997 (+) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KCV09_RS13470 rplS 2938207..2938578 (+) 372 WP_004934323.1 50S ribosomal protein L19 -
  KCV09_RS13475 - 2938645..2939616 (-) 972 WP_151814893.1 triacylglycerol lipase -
  KCV09_RS13480 - 2939751..2940788 (-) 1038 WP_212515274.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15411.50 Da        Isoelectric Point: 8.9198

>NTDB_id=558421 KCV09_RS13450 WP_212515273.1 2935815..2936249(+) (comF) [Acinetobacter soli strain M3-1-68]
MQAKKGFTLIELMIVVAVIGILAAIAYPSYQNYKIRVNRGEVQAELIRVAQQLQSYKVVNRSYANASLSGLGITSNFPAT
GTAFYTLGLTLDTDNQGYVLTATPNASTMQAGNGIVCLNQDGQKYWAKGSSSCSLSSASDWDGK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=558421 KCV09_RS13450 WP_212515273.1 2935815..2936249(+) (comF) [Acinetobacter soli strain M3-1-68]
ATGCAAGCAAAGAAAGGATTTACCTTAATTGAGCTGATGATTGTGGTGGCAGTCATTGGGATTCTGGCGGCAATTGCCTA
TCCGAGTTATCAGAATTATAAAATACGAGTGAATCGCGGTGAGGTTCAGGCCGAGTTGATTCGTGTGGCGCAGCAATTAC
AAAGTTATAAAGTGGTGAATCGGAGTTATGCCAATGCTTCACTCAGCGGTTTGGGTATTACATCGAATTTTCCGGCTACA
GGAACAGCATTTTATACATTAGGATTAACGCTCGATACTGATAATCAGGGCTATGTGCTGACGGCAACACCCAATGCATC
AACGATGCAGGCCGGAAATGGTATTGTATGTTTGAATCAGGATGGACAAAAGTACTGGGCCAAAGGCAGCAGCAGTTGCA
GCTTGAGTAGCGCCTCGGACTGGGATGGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

75.694

100

0.757
  pilE Acinetobacter baumannii D1279779

52.518

96.528

0.507
  pilA Pseudomonas aeruginosa PAK

35.669

100

0.389