Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCV09_RS13445 Genome accession   NZ_CP073241
Coordinates   2935342..2935815 (+) Length   157 a.a.
NCBI ID   WP_212515272.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2930342..2940815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13440 comC 2930915..2935276 (+) 4362 WP_212515271.1 PilC/PilY family type IV pilus protein Machinery gene
  KCV09_RS13445 comE 2935342..2935815 (+) 474 WP_212515272.1 type IV pilin protein Machinery gene
  KCV09_RS13450 comF 2935815..2936249 (+) 435 WP_212515273.1 type IV pilin protein Machinery gene
  KCV09_RS13455 rpsP 2936391..2936648 (+) 258 WP_004934313.1 30S ribosomal protein S16 -
  KCV09_RS13460 rimM 2936666..2937214 (+) 549 WP_004934317.1 ribosome maturation factor RimM -
  KCV09_RS13465 trmD 2937263..2937997 (+) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KCV09_RS13470 rplS 2938207..2938578 (+) 372 WP_004934323.1 50S ribosomal protein L19 -
  KCV09_RS13475 - 2938645..2939616 (-) 972 WP_151814893.1 triacylglycerol lipase -
  KCV09_RS13480 - 2939751..2940788 (-) 1038 WP_212515274.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17196.37 Da        Isoelectric Point: 8.4415

>NTDB_id=558420 KCV09_RS13445 WP_212515272.1 2935342..2935815(+) (comE) [Acinetobacter soli strain M3-1-68]
MSRSTQGFTLIELMVVVVMIAIVATIAIPNYQEYVRRSNLAAAQQEMQKIAALLERHRSRNFSYSGFALKGTADSKGPYY
DVANASDTALLLPLNSSSGSQKYTLDLSLNTQDWAIKASSADSNNYSLLLTSTGFRCKNKTTNNIDFTTCGTGSETW

Nucleotide


Download         Length: 474 bp        

>NTDB_id=558420 KCV09_RS13445 WP_212515272.1 2935342..2935815(+) (comE) [Acinetobacter soli strain M3-1-68]
ATGTCGCGTAGCACGCAAGGGTTTACCTTAATTGAGCTGATGGTGGTCGTGGTCATGATTGCCATTGTTGCCACCATTGC
GATTCCGAATTATCAGGAATACGTCCGTCGCTCTAATCTGGCAGCGGCACAGCAAGAAATGCAGAAAATTGCAGCCTTGC
TAGAACGACATCGTTCACGTAACTTTAGTTATTCAGGCTTTGCCTTAAAAGGAACAGCCGACAGTAAAGGGCCTTATTAC
GATGTCGCGAATGCGAGCGATACCGCTTTACTATTGCCATTAAACAGTAGCAGTGGGTCGCAAAAATACACATTAGATCT
GAGTTTAAATACACAGGATTGGGCAATTAAAGCCAGTAGTGCCGATTCAAATAATTACTCGCTGCTTCTGACCAGTACTG
GGTTTCGCTGCAAAAATAAAACAACAAACAATATCGATTTTACGACCTGCGGTACAGGTTCGGAGACATGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

57.895

100

0.631
  pilY2 Acinetobacter baumannii D1279779

39.264

100

0.408