Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCV09_RS10690 Genome accession   NZ_CP073241
Coordinates   2317665..2319152 (+) Length   495 a.a.
NCBI ID   WP_151819974.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2312665..2324152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS10665 ribD 2313609..2314697 (-) 1089 WP_228301591.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  KCV09_RS10670 nrdR 2314704..2315168 (-) 465 WP_004932226.1 transcriptional regulator NrdR -
  KCV09_RS10675 - 2315292..2316692 (-) 1401 WP_004944162.1 ammonium transporter -
  KCV09_RS10680 glnK 2316755..2317093 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  KCV09_RS10685 - 2317368..2317595 (+) 228 WP_025096171.1 accessory factor UbiK family protein -
  KCV09_RS10690 comM 2317665..2319152 (+) 1488 WP_151819974.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCV09_RS10695 - 2319196..2320008 (-) 813 WP_004932151.1 TorF family putative porin -
  KCV09_RS10700 - 2320624..2321925 (+) 1302 WP_151814953.1 OprD family outer membrane porin -
  KCV09_RS10705 ppa 2322017..2322544 (-) 528 WP_004932145.1 inorganic diphosphatase -
  KCV09_RS10710 - 2322664..2323062 (-) 399 WP_004932141.1 MAPEG family protein -
  KCV09_RS10715 - 2323172..2323558 (+) 387 WP_055415455.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54193.29 Da        Isoelectric Point: 8.1549

>NTDB_id=558404 KCV09_RS10690 WP_151819974.1 2317665..2319152(+) (comM) [Acinetobacter soli strain M3-1-68]
MSFAKILTRGVLGLHAPQIEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEGCTNGYELVGELALDGHLRPVSSTLTIAIACQQAGHQLIAPQDNSIEIGQLPQFQAYAASHL
KQVCDHFQKIHPLDPVVLIQDHDLHHYPFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLSA
QENLEVASIYSIANTRHPFGLRPFRAPHHTASAIALVGGGSNPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLEAKA
ITISRAARQISFPANFQLIAAMNPCPCGYAFNQDQRCQCTPEAIKRYQGRISGPLLDRIDLHIDVPPLQAHELQNTAPVE
DSASVRARVQKAYHYQIQRQQCLNQALSPKQLEAFAQLSPATEKIMSLAQQKLNLSARAYHRVLRVARTIADLEQSPLIE
RHHLNEALSYRTDMS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=558404 KCV09_RS10690 WP_151819974.1 2317665..2319152(+) (comM) [Acinetobacter soli strain M3-1-68]
ATGTCTTTTGCCAAAATTCTCACGCGAGGAGTTTTAGGGTTACACGCACCACAAATTGAAGTAGAAGTTCATTTAAGTCA
AGGACTTCCATCACTCACCATCGTTGGTTTACCAGAGGCTGCCGTTCGCGAAAGTAAAGATCGGGTGCGCTCAGCCATTA
TCAACAGTGGCTTTCAGTTTCCCAGTAAACGCCTCACAATAAACCTTGCTCCAGCAGATTTGCCCAAAGATGGGTCACGT
TTAGACCTTCCCATTGCCTTGGGAATTTTGGTCGCATCTGGACAACTTCCCGAAGGCTGCACCAATGGTTATGAGTTGGT
AGGCGAACTGGCTCTCGATGGCCATCTTCGTCCCGTCAGTAGCACATTGACCATAGCAATTGCCTGTCAGCAGGCAGGGC
ATCAACTTATTGCTCCGCAAGACAACAGCATTGAAATTGGTCAGTTACCGCAGTTTCAGGCCTATGCAGCCAGCCACTTG
AAACAGGTCTGTGATCACTTTCAAAAGATTCATCCGCTTGATCCAGTTGTGTTGATACAAGATCACGATCTACATCACTA
CCCTTTTGATCTTGCCGATGTCAAAGGTCAGCTACGTCCTCGCCGCGCTCTTGAAATTGCGGCAGCTGGAGGACATTCAC
TCTTATTTAGAGGGCCACCGGGAACAGGTAAAACTTTGCTGGCGTCACGCTTACCCAGCATATTGCCACCACTGTCTGCC
CAAGAAAATCTAGAAGTGGCCAGCATCTATTCAATTGCAAATACCCGTCATCCATTTGGTTTAAGGCCATTTCGAGCACC
GCATCATACTGCTTCAGCCATCGCCTTGGTGGGGGGTGGATCAAACCCAAAGCCCGGCGAAATCACGCTGTCGCATTTGG
GCGTACTCTTTTTGGATGAACTGCCCGAGTTTGATCGCAAGGTGCTTGAGGTTTTAAGGCAGCCGCTAGAAGCCAAAGCC
ATCACGATTTCAAGAGCTGCACGTCAAATTTCATTTCCGGCCAATTTTCAATTGATCGCTGCAATGAATCCATGTCCGTG
CGGTTATGCCTTTAATCAGGATCAACGCTGTCAATGCACACCCGAGGCAATTAAGCGTTATCAAGGTCGAATTTCTGGCC
CGTTACTTGACCGTATCGATTTACATATTGATGTACCGCCACTCCAAGCACACGAACTACAAAATACGGCGCCTGTTGAA
GATTCAGCAAGTGTTCGCGCACGTGTGCAAAAGGCTTATCACTATCAGATCCAACGCCAGCAATGCTTAAATCAGGCGCT
ATCACCAAAACAGCTTGAAGCATTTGCTCAGCTTAGTCCTGCAACTGAAAAAATTATGTCTTTGGCGCAGCAAAAACTCA
ATTTATCGGCTCGGGCTTATCATCGGGTACTGCGCGTGGCACGAACCATTGCAGATTTGGAGCAAAGTCCACTCATTGAG
CGGCACCATTTGAATGAAGCATTATCGTATCGTACCGATATGAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.101

100

0.501
  comM Legionella pneumophila str. Paris

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.499
  comM Glaesserella parasuis strain SC1401

49.098

100

0.495
  comM Haemophilus influenzae Rd KW20

48.497

100

0.489
  comM Vibrio cholerae strain A1552

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.463