Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   L1704_RS11575 Genome accession   NZ_CP091107
Coordinates   2206871..2207329 (-) Length   152 a.a.
NCBI ID   WP_327063280.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2201871..2212329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS11545 (L1704_11545) - 2202095..2202388 (+) 294 WP_058225986.1 hypothetical protein -
  L1704_RS11550 (L1704_11550) - 2202533..2203990 (+) 1458 WP_058225993.1 recombinase family protein -
  L1704_RS11555 (L1704_11555) - 2203987..2204127 (-) 141 WP_023164653.1 hypothetical protein -
  L1704_RS11560 (L1704_11560) comGB 2204141..2204719 (-) 579 WP_235589859.1 type II secretion system F family protein Machinery gene
  L1704_RS11565 (L1704_11565) istB 2204802..2205560 (-) 759 WP_003331414.1 IS21-like element IS712 family helper ATPase IstB -
  L1704_RS11570 (L1704_11570) istA 2205572..2206795 (-) 1224 WP_003331415.1 IS21-like element IS712 family transposase -
  L1704_RS11575 (L1704_11575) comGB 2206871..2207329 (-) 459 WP_327063280.1 type II secretion system F family protein Machinery gene
  L1704_RS11580 (L1704_11580) comGA 2207277..2208216 (-) 940 Protein_2198 competence type IV pilus ATPase ComGA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16897.34 Da        Isoelectric Point: 10.6851

>NTDB_id=558165 L1704_RS11575 WP_327063280.1 2206871..2207329(-) (comGB) [Lactococcus lactis subsp. lactis strain UC109]
MDISHLLKPRGKKLRLIKQAKLIQLMGNLLNSGFNLGEVINFLSLSKLVEKKFTLKMKEGLASGQALSELLESLSFSKNV
VTQLALVEVHGNLSGTMQLVELHLKKQLKVKNKLVEVATYPILLLIFLVGIMWGLKNYLLPQLNSGSNFATL

Nucleotide


Download         Length: 459 bp        

>NTDB_id=558165 L1704_RS11575 WP_327063280.1 2206871..2207329(-) (comGB) [Lactococcus lactis subsp. lactis strain UC109]
ATGGATATCTCACACCTACTGAAGCCAAGAGGGAAAAAATTAAGGCTGATTAAACAAGCCAAACTTATCCAACTGATGGG
AAATCTTTTGAATAGTGGATTTAATTTAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAAAATTTA
CATTGAAAATGAAAGAAGGTCTCGCTTCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTG
GTGACACAACTTGCTTTGGTAGAAGTGCATGGTAACTTGTCAGGGACGATGCAATTGGTTGAACTTCATCTAAAAAAACA
GCTTAAAGTTAAAAATAAATTAGTGGAAGTTGCTACTTATCCAATATTGTTATTAATTTTTCTGGTTGGAATTATGTGGG
GCTTAAAAAATTATTTACTACCACAACTCAATAGTGGCAGTAACTTTGCTACTCTGTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(23-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

82.781

99.342

0.822
  comGB Streptococcus gordonii str. Challis substr. CH1

56

98.684

0.553
  comGB/cglB Streptococcus pneumoniae TIGR4

52.318

99.342

0.52
  comGB/cglB Streptococcus pneumoniae Rx1

52.318

99.342

0.52
  comGB/cglB Streptococcus pneumoniae D39

52.318

99.342

0.52
  comGB/cglB Streptococcus pneumoniae R6

52.318

99.342

0.52
  comGB/cglB Streptococcus mitis NCTC 12261

52.318

99.342

0.52
  comGB/cglB Streptococcus mitis SK321

51.656

99.342

0.513
  comGB Streptococcus mutans UA159

58.462

85.526

0.5
  comGB Streptococcus mutans UA140

58.462

85.526

0.5