Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KCG51_RS05435 Genome accession   NZ_CP073119
Coordinates   1117458..1118171 (-) Length   237 a.a.
NCBI ID   WP_250579638.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112458..1123171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS05405 (KCG51_05415) - 1113591..1113968 (-) 378 WP_250579626.1 hypothetical protein -
  KCG51_RS05410 (KCG51_05420) - 1114106..1114726 (+) 621 WP_250579628.1 Smr/MutS family protein -
  KCG51_RS05415 (KCG51_05425) - 1114779..1115255 (-) 477 WP_250579630.1 PilX family type IV pilin -
  KCG51_RS05420 (KCG51_05430) pilK 1115273..1115854 (-) 582 WP_250579632.1 pilus assembly protein Machinery gene
  KCG51_RS05425 (KCG51_05435) pilJ 1115833..1116768 (-) 936 WP_250579634.1 pilus assembly protein PilW Machinery gene
  KCG51_RS05430 (KCG51_05440) pilI 1116771..1117352 (-) 582 WP_250579636.1 type IV pilus modification protein PilV Machinery gene
  KCG51_RS05435 (KCG51_05445) pilH 1117458..1118171 (-) 714 WP_250579638.1 GspH/FimT family pseudopilin Machinery gene
  KCG51_RS05440 (KCG51_05450) dnaB 1118328..1119734 (-) 1407 WP_250579645.1 replicative DNA helicase -
  KCG51_RS05445 (KCG51_05455) - 1119889..1120470 (+) 582 WP_250579647.1 superoxide dismutase -
  KCG51_RS05450 (KCG51_05460) - 1120694..1122235 (+) 1542 WP_254342963.1 OFA family MFS transporter -
  KCG51_RS05455 (KCG51_05465) - 1122294..1123139 (-) 846 WP_250579651.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26722.26 Da        Isoelectric Point: 8.4329

>NTDB_id=558164 KCG51_RS05435 WP_250579638.1 1117458..1118171(-) (pilH) [Neisseria subflava strain HP0069]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRRNLPVYICPVKIKSDGSHNG
CIHKKTSTSKKNSTSTSIGMLAYADKNENSSYQNDEDDLSIRYIILNGDTEKVEYRFDYIPSGTSRSALSSSDPKEVWWK
FLPNGTFEYLIDDKDGDKDKKNYQFSDGHIKISLTDKFATDAETKKARATVLLINGNGHVEICAKNDERKMCEYTSK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=558164 KCG51_RS05435 WP_250579638.1 1117458..1118171(-) (pilH) [Neisseria subflava strain HP0069]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCTGTAATGGCCGTCATCGC
GCTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CTCGTAATGAGGCTGTCCGTCGCAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGCTCGCATAATGGT
TGCATTCACAAAAAAACCAGTACCAGTAAAAAAAACAGTACCAGTACCAGTATTGGTATGTTGGCCTACGCCGATAAAAA
CGAAAATTCCAGCTATCAAAATGATGAAGATGATTTATCTATCCGCTACATCATTCTCAATGGCGACACTGAAAAAGTGG
AATACCGCTTCGACTATATTCCCAGCGGTACTTCACGTTCCGCCCTCTCCTCTTCCGATCCAAAAGAAGTCTGGTGGAAA
TTCCTGCCCAATGGTACATTTGAATATTTAATCGATGATAAGGATGGTGATAAGGATAAGAAAAATTATCAATTTTCAGA
CGGTCACATCAAAATCAGCCTGACGGATAAATTTGCCACCGATGCTGAAACCAAAAAAGCCCGTGCTACCGTACTTTTAA
TCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCAAAATGTGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

50.649

97.468

0.494