Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   L1704_RS11560 Genome accession   NZ_CP091107
Coordinates   2204141..2204719 (-) Length   192 a.a.
NCBI ID   WP_235589859.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2199141..2209719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS11515 (L1704_11515) - 2199273..2199515 (-) 243 WP_058225988.1 hypothetical protein -
  L1704_RS13010 - 2199528..2199650 (-) 123 WP_023164646.1 hypothetical protein -
  L1704_RS11520 (L1704_11520) - 2199647..2199829 (-) 183 WP_003130605.1 hypothetical protein -
  L1704_RS11525 (L1704_11525) - 2199845..2200558 (-) 714 WP_081042558.1 ORF6C domain-containing protein -
  L1704_RS11530 (L1704_11530) - 2200614..2200823 (-) 210 WP_023164648.1 helix-turn-helix transcriptional regulator -
  L1704_RS11535 (L1704_11535) - 2201016..2201441 (+) 426 WP_201013557.1 XRE family transcriptional regulator -
  L1704_RS11540 (L1704_11540) - 2201452..2202036 (+) 585 WP_058225987.1 hypothetical protein -
  L1704_RS11545 (L1704_11545) - 2202095..2202388 (+) 294 WP_058225986.1 hypothetical protein -
  L1704_RS11550 (L1704_11550) - 2202533..2203990 (+) 1458 WP_058225993.1 recombinase family protein -
  L1704_RS11555 (L1704_11555) - 2203987..2204127 (-) 141 WP_023164653.1 hypothetical protein -
  L1704_RS11560 (L1704_11560) comGB 2204141..2204719 (-) 579 WP_235589859.1 type II secretion system F family protein Machinery gene
  L1704_RS11565 (L1704_11565) istB 2204802..2205560 (-) 759 WP_003331414.1 IS21-like element IS712 family helper ATPase IstB -
  L1704_RS11570 (L1704_11570) istA 2205572..2206795 (-) 1224 WP_003331415.1 IS21-like element IS712 family transposase -
  L1704_RS11575 (L1704_11575) comGB 2206871..2207329 (-) 459 WP_327063280.1 type II secretion system F family protein Machinery gene
  L1704_RS11580 (L1704_11580) comGA 2207277..2208216 (-) 940 Protein_2198 competence type IV pilus ATPase ComGA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21965.40 Da        Isoelectric Point: 9.5953

>NTDB_id=558164 L1704_RS11560 WP_235589859.1 2204141..2204719(-) (comGB) [Lactococcus lactis subsp. lactis strain UC109]
MTATLLINHLPLVFFSFGAFIFLLTALSVTLFKRKSAIMNFTFLVKLPLVHSFIRLYLTAYFAREWGNLIAQGVELRQII
NLMKKQKSRIFSEVGKNLDLELNAGRSFEQAVSKLALFLPELSLMIEYGAIKDKLGLELSLYADECWEHFFTKIDRLMQL
IQPLVFIFVALMIILLYAAMLLPIYSNMGSGI

Nucleotide


Download         Length: 579 bp        

>NTDB_id=558164 L1704_RS11560 WP_235589859.1 2204141..2204719(-) (comGB) [Lactococcus lactis subsp. lactis strain UC109]
TTGACAGCTACTCTATTGATTAATCATTTACCCTTAGTATTTTTTTCGTTTGGAGCTTTTATATTTTTACTGACAGCTTT
GTCAGTAACTCTTTTTAAACGAAAATCAGCAATAATGAATTTTACCTTTCTTGTTAAATTACCTCTGGTTCATTCTTTTA
TCCGTTTATATTTAACAGCTTACTTTGCAAGAGAATGGGGAAATCTAATTGCTCAAGGTGTTGAATTACGTCAAATTATT
AACTTGATGAAAAAACAAAAAAGTCGAATTTTTTCAGAAGTTGGCAAGAATCTTGATTTAGAATTGAATGCTGGTCGGTC
TTTTGAACAAGCTGTCAGTAAACTTGCGCTTTTTTTACCCGAGCTCTCATTAATGATTGAATATGGAGCTATTAAAGATA
AATTAGGCTTAGAGCTTTCGCTTTATGCGGATGAATGTTGGGAACATTTTTTTACAAAGATAGATCGTTTAATGCAATTA
ATCCAACCTCTTGTTTTTATTTTCGTAGCATTGATGATTATTTTGCTATATGCAGCCATGTTACTCCCCATCTATTCAAA
TATGGGTTCTGGAATATAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(62-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

83.684

98.958

0.828
  comGB Streptococcus gordonii str. Challis substr. CH1

52.151

96.875

0.505
  comGB Streptococcus mutans UA140

51.337

97.396

0.5
  comGB Streptococcus mutans UA159

50.802

97.396

0.495
  comGB/cglB Streptococcus pneumoniae R6

51.075

96.875

0.495
  comGB/cglB Streptococcus pneumoniae TIGR4

51.075

96.875

0.495
  comGB/cglB Streptococcus mitis SK321

51.075

96.875

0.495
  comGB/cglB Streptococcus pneumoniae D39

51.075

96.875

0.495
  comGB/cglB Streptococcus pneumoniae Rx1

51.075

96.875

0.495
  comGB/cglB Streptococcus mitis NCTC 12261

48.925

96.875

0.474