Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KCG51_RS05420 Genome accession   NZ_CP073119
Coordinates   1115273..1115854 (-) Length   193 a.a.
NCBI ID   WP_250579632.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1110273..1120854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS05395 (KCG51_05405) - 1111367..1111936 (-) 570 WP_250579616.1 RNA 2'-phosphotransferase -
  KCG51_RS05400 (KCG51_05410) trpE 1111980..1113455 (-) 1476 WP_250579618.1 anthranilate synthase component I -
  KCG51_RS05405 (KCG51_05415) - 1113591..1113968 (-) 378 WP_250579626.1 hypothetical protein -
  KCG51_RS05410 (KCG51_05420) - 1114106..1114726 (+) 621 WP_250579628.1 Smr/MutS family protein -
  KCG51_RS05415 (KCG51_05425) - 1114779..1115255 (-) 477 WP_250579630.1 PilX family type IV pilin -
  KCG51_RS05420 (KCG51_05430) pilK 1115273..1115854 (-) 582 WP_250579632.1 pilus assembly protein Machinery gene
  KCG51_RS05425 (KCG51_05435) pilJ 1115833..1116768 (-) 936 WP_250579634.1 pilus assembly protein PilW Machinery gene
  KCG51_RS05430 (KCG51_05440) pilI 1116771..1117352 (-) 582 WP_250579636.1 type IV pilus modification protein PilV Machinery gene
  KCG51_RS05435 (KCG51_05445) pilH 1117458..1118171 (-) 714 WP_250579638.1 GspH/FimT family pseudopilin Machinery gene
  KCG51_RS05440 (KCG51_05450) dnaB 1118328..1119734 (-) 1407 WP_250579645.1 replicative DNA helicase -
  KCG51_RS05445 (KCG51_05455) - 1119889..1120470 (+) 582 WP_250579647.1 superoxide dismutase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21554.51 Da        Isoelectric Point: 6.9102

>NTDB_id=558161 KCG51_RS05420 WP_250579632.1 1115273..1115854(-) (pilK) [Neisseria subflava strain HP0069]
MRRPITLIKPERQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKFATTLAEAALREGENHIYEIEDGKKPF
TDDCAEGLCKAANVTAGTYTIASGTITVSGTSKDEAWIREDNKKETKYIDINGIKYPSVTGVKSCEKKKDACYIIEYLST
NSTDNRTIYRVTAKAWGKNENTVVILQSYVANE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=558161 KCG51_RS05420 WP_250579632.1 1115273..1115854(-) (pilK) [Neisseria subflava strain HP0069]
ATGCGCCGACCGATCACTCTAATCAAACCCGAACGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
TATCGCACTGCTCGTGGTTACAGCCACCCAGTCCTATAATACCGAACAGCGTATCAGCACCAATGATGCCGACCGCAAGT
TTGCTACCACGCTTGCGGAAGCAGCATTGCGTGAAGGTGAGAACCACATTTATGAAATCGAAGACGGTAAAAAACCATTT
ACTGATGATTGTGCCGAAGGATTGTGTAAAGCTGCTAATGTTACAGCGGGAACCTACACTATTGCTTCAGGAACAATTAC
CGTCAGTGGTACTTCAAAAGATGAAGCATGGATTCGAGAAGACAATAAAAAAGAAACAAAATACATTGATATTAACGGAA
TAAAATATCCAAGTGTAACAGGTGTAAAAAGTTGTGAGAAAAAAAAAGATGCGTGTTATATCATCGAATACCTAAGCACC
AATTCTACCGACAACCGTACCATTTACCGCGTTACCGCCAAAGCATGGGGGAAAAACGAAAATACGGTGGTTATACTACA
ATCTTATGTAGCCAACGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(105-191)

PilX N-terminal (PilX_N)

(14-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

50.971

100

0.544