Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCG51_RS04955 Genome accession   NZ_CP073119
Coordinates   1026312..1026839 (+) Length   175 a.a.
NCBI ID   WP_049332709.1    Uniprot ID   A0AB36GAZ9
Organism   Neisseria subflava strain HP0069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1021312..1031839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS04935 (KCG51_04945) rbfA 1021963..1022334 (-) 372 WP_003685554.1 30S ribosome-binding factor RbfA -
  KCG51_RS04940 (KCG51_04950) ppx 1022422..1023930 (-) 1509 WP_003685647.1 exopolyphosphatase -
  KCG51_RS04945 (KCG51_04955) - 1024103..1024726 (+) 624 WP_250579440.1 lytic transglycosylase domain-containing protein -
  KCG51_RS04950 (KCG51_04960) - 1024928..1026310 (+) 1383 WP_003685608.1 MFS transporter -
  KCG51_RS04955 (KCG51_04965) ssb 1026312..1026839 (+) 528 WP_049332709.1 single-stranded DNA-binding protein Machinery gene
  KCG51_RS04960 (KCG51_04970) plsY 1026913..1027524 (-) 612 WP_250579447.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  KCG51_RS04965 (KCG51_04975) folB 1027583..1027933 (+) 351 WP_063075429.1 dihydroneopterin aldolase -
  KCG51_RS04970 (KCG51_04980) - 1027980..1028627 (+) 648 WP_254342896.1 nuclease-related domain-containing protein -
  KCG51_RS04975 (KCG51_04985) - 1028713..1029249 (+) 537 WP_254342898.1 NUDIX hydrolase -
  KCG51_RS04980 (KCG51_04990) - 1029379..1030017 (-) 639 WP_063075431.1 alpha/beta hydrolase -
  KCG51_RS04985 (KCG51_04995) - 1030059..1030853 (-) 795 WP_070592056.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19535.56 Da        Isoelectric Point: 5.7974

>NTDB_id=558159 KCG51_RS04955 WP_049332709.1 1026312..1026839(+) (ssb) [Neisseria subflava strain HP0069]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGYNQGGHSSQSSYQQAPQQQYQSAPAQEPPAAPARRPAPA
QPTAPVDDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=558159 KCG51_RS04955 WP_049332709.1 1026312..1026839(+) (ssb) [Neisseria subflava strain HP0069]
ATGTCATTAAATAAAGTTATCCTCATCGGCCGACTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACTTGGAACGACCGTAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATTGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTATCTTGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCTTACGACATCATCGCCAACGAAATGAAAATGCTCGG
CGGCCGCAACGACAACAGTGGCGGCGCACCATACGATGACGGCTACAACCAAGGCGGTCATTCAAGCCAAAGCAGCTACC
AACAAGCGCCACAACAGCAATACCAATCTGCTCCGGCTCAAGAGCCCCCAGCCGCCCCAGCCCGTCGTCCTGCCCCGGCA
CAACCAACTGCCCCGGTTGATGATATCGACGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Vibrio cholerae strain A1552

50

100

0.509
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.491