Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG55_RS03235 Genome accession   NZ_CP073117
Coordinates   660227..660514 (-) Length   95 a.a.
NCBI ID   WP_254322411.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655227..665514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS03210 (KCG55_03215) - 655863..656234 (-) 372 WP_070460620.1 hypothetical protein -
  KCG55_RS03215 (KCG55_03220) - 656231..656791 (-) 561 WP_070460621.1 hypothetical protein -
  KCG55_RS03220 (KCG55_03225) - 656781..657248 (-) 468 WP_107769084.1 hypothetical protein -
  KCG55_RS03225 (KCG55_03230) uvrB 657314..659332 (-) 2019 WP_254323384.1 excinuclease ABC subunit UvrB -
  KCG55_RS03230 (KCG55_03235) comP 659552..659965 (-) 414 WP_254323645.1 type IV pilin protein Machinery gene
  KCG55_RS03235 (KCG55_03240) comE 660227..660514 (-) 288 WP_254322411.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9793.45 Da        Isoelectric Point: 10.4923

>NTDB_id=558110 KCG55_RS03235 WP_254322411.1 660227..660514(-) (comE) [Neisseria subflava strain HP0015]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKTAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558110 KCG55_RS03235 WP_254322411.1 660227..660514(-) (comE) [Neisseria subflava strain HP0015]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCGTTCTCTTTGGCTGCCGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGACCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  comE Neisseria gonorrhoeae MS11

69.412

89.474

0.621
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.659

86.316

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4