Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG55_RS03230 Genome accession   NZ_CP073117
Coordinates   659552..659965 (-) Length   137 a.a.
NCBI ID   WP_254323645.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654552..664965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS03205 (KCG55_03210) xth 654861..655631 (+) 771 WP_254323383.1 exodeoxyribonuclease III -
  KCG55_RS03210 (KCG55_03215) - 655863..656234 (-) 372 WP_070460620.1 hypothetical protein -
  KCG55_RS03215 (KCG55_03220) - 656231..656791 (-) 561 WP_070460621.1 hypothetical protein -
  KCG55_RS03220 (KCG55_03225) - 656781..657248 (-) 468 WP_107769084.1 hypothetical protein -
  KCG55_RS03225 (KCG55_03230) uvrB 657314..659332 (-) 2019 WP_254323384.1 excinuclease ABC subunit UvrB -
  KCG55_RS03230 (KCG55_03235) comP 659552..659965 (-) 414 WP_254323645.1 type IV pilin protein Machinery gene
  KCG55_RS03235 (KCG55_03240) comE 660227..660514 (-) 288 WP_254322411.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15024.49 Da        Isoelectric Point: 9.6523

>NTDB_id=558109 KCG55_RS03230 WP_254323645.1 659552..659965(-) (comP) [Neisseria subflava strain HP0015]
MLVVSILATVAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECRPFMG

Nucleotide


Download         Length: 414 bp        

>NTDB_id=558109 KCG55_RS03230 WP_254323645.1 659552..659965(-) (comP) [Neisseria subflava strain HP0015]
ATGCTGGTGGTTTCGATCTTGGCGACGGTGGCATTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGCGCGGC
GCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGTTGCCGGTCAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGGATCTTGGAGGGG
AAGTTTACTTTGAAGGCGGTGGCGCTGGATAGGGAGGCGGAACCGAGGGTATTGCGCTTGAATGAGTCGCTGACGGCGGT
GGTGTGCGGGAAGATGAAGGGGAAGGGAAGCTGTACGGACGGTGAGGAGATATTTAGGGGTAATGATGCGGAGTGTCGGC
CTTTTATGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

96.35

100

0.964
  comP Neisseria meningitidis 8013

50.37

98.54

0.496
  comP Neisseria gonorrhoeae MS11

50.376

97.08

0.489