Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG56_RS08445 Genome accession   NZ_CP073116
Coordinates   1758510..1758797 (-) Length   95 a.a.
NCBI ID   WP_254321153.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753510..1763797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS08420 (KCG56_08470) - 1754185..1754346 (+) 162 WP_254321148.1 hypothetical protein -
  KCG56_RS08425 (KCG56_08475) - 1754332..1755120 (-) 789 WP_254321149.1 hypothetical protein -
  KCG56_RS08430 (KCG56_08480) - 1755143..1755586 (-) 444 WP_254321150.1 YbjN domain-containing protein -
  KCG56_RS08435 (KCG56_08485) uvrB 1755626..1757659 (-) 2034 WP_254321151.1 excinuclease ABC subunit UvrB -
  KCG56_RS08440 (KCG56_08490) comP 1757866..1758300 (-) 435 WP_254321152.1 type IV pilin protein Machinery gene
  KCG56_RS08445 (KCG56_08495) comE 1758510..1758797 (-) 288 WP_254321153.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9805.50 Da        Isoelectric Point: 10.4923

>NTDB_id=558085 KCG56_RS08445 WP_254321153.1 1758510..1758797(-) (comE) [Neisseria subflava strain TT0073]
MKKFLFGAFAAVCAAFSLAAVNINIASSAELETLPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558085 KCG56_RS08445 WP_254321153.1 1758510..1758797(-) (comE) [Neisseria subflava strain TT0073]
ATGAAGAAATTTTTATTTGGTGCGTTTGCCGCCGTCTGTGCGGCGTTCTCTTTGGCCGCTGTGAACATCAACATCGCGTC
TTCTGCCGAACTGGAGACCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

68.235

89.474

0.611
  comE Neisseria gonorrhoeae MS11

68.235

89.474

0.611
  comE Neisseria gonorrhoeae MS11

68.235

89.474

0.611
  comE Neisseria gonorrhoeae MS11

68.235

89.474

0.611
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.439

86.316

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4