Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG56_RS08440 Genome accession   NZ_CP073116
Coordinates   1757866..1758300 (-) Length   144 a.a.
NCBI ID   WP_254321152.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1752866..1763300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS08415 (KCG56_08465) xth 1753282..1754052 (+) 771 WP_254321147.1 exodeoxyribonuclease III -
  KCG56_RS08420 (KCG56_08470) - 1754185..1754346 (+) 162 WP_254321148.1 hypothetical protein -
  KCG56_RS08425 (KCG56_08475) - 1754332..1755120 (-) 789 WP_254321149.1 hypothetical protein -
  KCG56_RS08430 (KCG56_08480) - 1755143..1755586 (-) 444 WP_254321150.1 YbjN domain-containing protein -
  KCG56_RS08435 (KCG56_08485) uvrB 1755626..1757659 (-) 2034 WP_254321151.1 excinuclease ABC subunit UvrB -
  KCG56_RS08440 (KCG56_08490) comP 1757866..1758300 (-) 435 WP_254321152.1 type IV pilin protein Machinery gene
  KCG56_RS08445 (KCG56_08495) comE 1758510..1758797 (-) 288 WP_254321153.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15835.52 Da        Isoelectric Point: 9.6523

>NTDB_id=558084 KCG56_RS08440 WP_254321152.1 1757866..1758300(-) (comP) [Neisseria subflava strain TT0073]
MIQLLVVMLLVSILTTAAFTAYRESVRSANLRAAHVALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMSGQ
AKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECRPFTG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=558084 KCG56_RS08440 WP_254321152.1 1757866..1758300(-) (comP) [Neisseria subflava strain TT0073]
TTGATACAGCTGTTGGTGGTGATGCTGTTGGTTTCGATATTGACAACGGCGGCATTTACGGCCTATCGGGAATCGGTTCG
TTCGGCCAACCTGCGTGCGGCGCATGTTGCTTTGTTGGAGAATGCGCGCTTTATGGAGCAGTTCTACACGAAAAAGGGCA
GCTTTAAGCTGACGTCGACGAAGTGGCCGGAGTTGCCGGTAAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAG
GCTAAGGGTATCTTGGAGGGGAAGTTTACTTTGAAGGCGGTGGCACTGGACAGGGAGGCGGAACCGAGGGTGTTGCGCTT
GAATGAGTCGCTGACGGCGGTGGTGTGCGGGAAGATGAAGGGGAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGG
GCAATGATGCGGAGTGTCGGCCTTTTACGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(21-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

96.528

100

0.965
  comP Neisseria meningitidis 8013

47.887

98.611

0.472
  comP Neisseria gonorrhoeae MS11

47.857

97.222

0.465