Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KCG56_RS07785 Genome accession   NZ_CP073116
Coordinates   1623758..1625890 (-) Length   710 a.a.
NCBI ID   WP_070591492.1    Uniprot ID   A0A9X9HXR8
Organism   Neisseria subflava strain TT0073     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618758..1630890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS07760 (KCG56_07825) - 1619149..1619715 (+) 567 WP_049328898.1 NADPH-dependent FMN reductase -
  KCG56_RS07765 (KCG56_07830) - 1619861..1620529 (+) 669 WP_063068250.1 response regulator -
  KCG56_RS07770 (KCG56_07835) - 1620568..1621881 (+) 1314 WP_254321075.1 ATP-binding protein -
  KCG56_RS07775 (KCG56_07840) aroB 1622011..1623090 (-) 1080 WP_107848890.1 3-dehydroquinate synthase -
  KCG56_RS07780 (KCG56_07845) - 1623113..1623634 (-) 522 WP_254321076.1 shikimate kinase -
  KCG56_RS07785 (KCG56_07850) pilQ 1623758..1625890 (-) 2133 WP_070591492.1 type IV pilus secretin PilQ Machinery gene
  KCG56_RS07790 (KCG56_07855) pilP 1625911..1626453 (-) 543 WP_070836784.1 pilus assembly protein PilP Machinery gene
  KCG56_RS07795 (KCG56_07860) pilO 1626469..1627140 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG56_RS07800 (KCG56_07865) pilN 1627140..1627763 (-) 624 WP_107867828.1 PilN domain-containing protein Machinery gene
  KCG56_RS07805 (KCG56_07870) pilM 1627768..1628859 (-) 1092 WP_254321077.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78035.17 Da        Isoelectric Point: 9.6985

>NTDB_id=558081 KCG56_RS07785 WP_070591492.1 1623758..1625890(-) (pilQ) [Neisseria subflava strain TT0073]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARAAQTYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNVNKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=558081 KCG56_RS07785 WP_070591492.1 1623758..1625890(-) (pilQ) [Neisseria subflava strain TT0073]
ATGAAAACCAAACACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCTACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAATACCAATATCCGTTTGCCTCAACCTGTTTTG
GAATATGCCGACCCATTGCTGAATCAAATTACTGCGGCGCAAAACAATGACCGTGCACGCGTGGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTATTTGTAAACGAATCTACTGACCAAACCAATGCGG
CCGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCGCTGCTCAGACTTATCAAGCTGTTTCAGCAGCCAATATC
GATTTTCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGCCCCTGGTTTCAGCGGACAGCCGGACATTAAACA
GCAGCGCGACCGCGTGGTTGTGACATTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACTCCTGTACAAAACGTTACGCTCAAGCGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCTTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGTGG
CTTGAACCAAAATGTAAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTGGATTTGGTCATGCAGGCACGCAATTTGGATATGCGCCGTCAAGGCAATATCATTAA
TATTGCGCCTCGCGATGAATTGTTGGCAAAAGATAAAGCCTTCTTACAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAATGTGGAAGAGTTCCGTAAAATTCTGCGTTTGGAAGAATACGACAGT
AATAATTCCAATACCCGCAATACTCTGTTGAGCAACCGAGGCAGTGCCTTAATCGATCCGGCCACCAATACGCTGATCGT
AACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTTATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCTTCATTTAATCGTGGCGACGTAGGCTA
CCGCACATGGACTTTGGATCCGAACGTGAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGCTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAATACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
CCCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGTGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATCATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

AMIN domain (AMIN)

(38-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis MC58

60.664

100

0.669
  pilQ Neisseria meningitidis M1080

61.29

100

0.669
  pilQ Neisseria gonorrhoeae strain FA1090

64.179

100

0.666