Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KCG56_RS07790 Genome accession   NZ_CP073116
Coordinates   1625911..1626453 (-) Length   180 a.a.
NCBI ID   WP_070836784.1    Uniprot ID   A0A9X9HX83
Organism   Neisseria subflava strain TT0073     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620911..1631453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS07775 (KCG56_07840) aroB 1622011..1623090 (-) 1080 WP_107848890.1 3-dehydroquinate synthase -
  KCG56_RS07780 (KCG56_07845) - 1623113..1623634 (-) 522 WP_254321076.1 shikimate kinase -
  KCG56_RS07785 (KCG56_07850) pilQ 1623758..1625890 (-) 2133 WP_070591492.1 type IV pilus secretin PilQ Machinery gene
  KCG56_RS07790 (KCG56_07855) pilP 1625911..1626453 (-) 543 WP_070836784.1 pilus assembly protein PilP Machinery gene
  KCG56_RS07795 (KCG56_07860) pilO 1626469..1627140 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG56_RS07800 (KCG56_07865) pilN 1627140..1627763 (-) 624 WP_107867828.1 PilN domain-containing protein Machinery gene
  KCG56_RS07805 (KCG56_07870) pilM 1627768..1628859 (-) 1092 WP_254321077.1 type IV pilus assembly protein PilM -
  KCG56_RS07810 (KCG56_07875) - 1629012..1631408 (+) 2397 WP_036492816.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20031.56 Da        Isoelectric Point: 5.3039

>NTDB_id=558082 KCG56_RS07790 WP_070836784.1 1625911..1626453(-) (pilP) [Neisseria subflava strain TT0073]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVILPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=558082 KCG56_RS07790 WP_070836784.1 1625911..1626453(-) (pilP) [Neisseria subflava strain TT0073]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTATATTGCCTAAGCCGTATAGCC
CTCCGAACTTTAAAGGCATGAATGCGTTTGATTCACGCCGTTTGGACACTGCCCCTAAAGGCGGCAATGCGCCGGATGTG
AATCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAACATGGCCTTCGTCGGAACGCTTCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAGGTCAACGACCATGTTTATACCGTTTATCCAGGAAACTATATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACTGAAGATAAAATTATCTTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCGGATTCTTCCAATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572