Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCG56_RS07800 Genome accession   NZ_CP073116
Coordinates   1627140..1627763 (-) Length   207 a.a.
NCBI ID   WP_107867828.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622140..1632763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS07780 (KCG56_07845) - 1623113..1623634 (-) 522 WP_254321076.1 shikimate kinase -
  KCG56_RS07785 (KCG56_07850) pilQ 1623758..1625890 (-) 2133 WP_070591492.1 type IV pilus secretin PilQ Machinery gene
  KCG56_RS07790 (KCG56_07855) pilP 1625911..1626453 (-) 543 WP_070836784.1 pilus assembly protein PilP Machinery gene
  KCG56_RS07795 (KCG56_07860) pilO 1626469..1627140 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG56_RS07800 (KCG56_07865) pilN 1627140..1627763 (-) 624 WP_107867828.1 PilN domain-containing protein Machinery gene
  KCG56_RS07805 (KCG56_07870) pilM 1627768..1628859 (-) 1092 WP_254321077.1 type IV pilus assembly protein PilM -
  KCG56_RS07810 (KCG56_07875) - 1629012..1631408 (+) 2397 WP_036492816.1 penicillin-binding protein 1A -
  KCG56_RS07815 (KCG56_07880) - 1631469..1632305 (+) 837 WP_036492813.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23044.27 Da        Isoelectric Point: 4.7171

>NTDB_id=558083 KCG56_RS07800 WP_107867828.1 1627140..1627763(-) (pilN) [Neisseria subflava strain TT0073]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLGIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNALTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=558083 KCG56_RS07800 WP_107867828.1 1627140..1627763(-) (pilN) [Neisseria subflava strain TT0073]
ATGATCGAATTAACCAGAATCAACCTTCTTCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGTGCTTTTGCAGTGGGTTTGGGCTTGGCGGCTGCTACCTATCTCGGTATTGACAGCGCCATCAGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATCGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTGGAAGAGTTGCAGGAAAAACGCTATCAAGCGGCTTATATCCTTGATTC
TTTGAATGCGCTTACGCCCGATAATACTTATTTGACTGCGTTGGAAGCAGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGATAATAAAATTGCCGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAACCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCCCC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCAGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536