Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KCG54_RS09460 Genome accession   NZ_CP073115
Coordinates   1970944..1973076 (-) Length   710 a.a.
NCBI ID   WP_254324023.1    Uniprot ID   A0A9X9N0V6
Organism   Neisseria subflava strain TT0077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1965944..1978076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS09435 (KCG54_09470) - 1966336..1966902 (+) 567 WP_070825875.1 NADPH-dependent FMN reductase -
  KCG54_RS09440 (KCG54_09475) - 1967048..1967725 (+) 678 WP_070460434.1 response regulator -
  KCG54_RS09445 (KCG54_09480) - 1967755..1969068 (+) 1314 WP_254324021.1 ATP-binding protein -
  KCG54_RS09450 (KCG54_09485) aroB 1969199..1970278 (-) 1080 WP_254324022.1 3-dehydroquinate synthase -
  KCG54_RS09455 (KCG54_09490) - 1970301..1970813 (-) 513 WP_003684491.1 shikimate kinase -
  KCG54_RS09460 (KCG54_09495) pilQ 1970944..1973076 (-) 2133 WP_254324023.1 type IV pilus secretin PilQ Machinery gene
  KCG54_RS09465 (KCG54_09500) pilP 1973097..1973639 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG54_RS09470 (KCG54_09505) pilO 1973655..1974326 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG54_RS09475 (KCG54_09510) pilN 1974326..1974949 (-) 624 WP_254324024.1 PilN domain-containing protein Machinery gene
  KCG54_RS09480 (KCG54_09515) pilM 1974954..1976045 (-) 1092 WP_039862505.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78065.20 Da        Isoelectric Point: 9.6985

>NTDB_id=558048 KCG54_RS09460 WP_254324023.1 1970944..1973076(-) (pilQ) [Neisseria subflava strain TT0077]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARAAQTYQAVSAANI
DFRKGARNSGIIELSVPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNTNKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=558048 KCG54_RS09460 WP_254324023.1 1970944..1973076(-) (pilQ) [Neisseria subflava strain TT0077]
ATGAAAACCAAACACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACTACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATCGCATTGGATTTTGCCAACACCAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCAGACCCATTGCTGAATCAAATTACTGCGGCACAGAACAATGACCGCGCACGCGTAGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTGTTTGTAAACGAATCTACTGACCAAACCAATGCAG
CCGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCGCTGCTCAGACTTATCAAGCCGTTTCAGCAGCCAATATC
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGTCCCAGGTTTCAGCGGGCAGCCGGATATTAAACA
ACAGCGCGACCGCGTGGTTGTTACCTTGAAAAACCATACTCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACCCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATTAATACCAAAGCTTCTTCCGGACGCTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
TTTGAACCAAAATACGAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGTGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACTTTATCCCTGAAA
GATGTACCTTGGGATCAGGCTCTGGATTTGGTCATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATTATCAA
TATCGCACCTCGCGATGAATTATTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAATGTGGAAGAATTCCGCAAAATTCTGCGCTTGGAAGAATACGACAGC
AATAATTCCAATACCCGTAATACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCGGCCACTAATACGCTGATCGT
GACCGATAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGTCGT
AATGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGATGTAGGCTA
CCGCACATGGACTTTGGATCCGAACGTCAGTCTGCCGACCGCAGCTGCAGTCAACAGCATTGCACTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGTTTAGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACGCAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCAACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCTATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
ACCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGTGGCAAGCGTGAAAACCGCCGCGAACTGTTGA
TTTTTATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Secretin and TonB N terminus short domain (STN)

(303-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

61.161

100

0.668
  pilQ Neisseria meningitidis MC58

60.536

100

0.668
  pilQ Neisseria gonorrhoeae strain FA1090

64.043

100

0.665