Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCG54_RS09475 Genome accession   NZ_CP073115
Coordinates   1974326..1974949 (-) Length   207 a.a.
NCBI ID   WP_254324024.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969326..1979949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS09455 (KCG54_09490) - 1970301..1970813 (-) 513 WP_003684491.1 shikimate kinase -
  KCG54_RS09460 (KCG54_09495) pilQ 1970944..1973076 (-) 2133 WP_254324023.1 type IV pilus secretin PilQ Machinery gene
  KCG54_RS09465 (KCG54_09500) pilP 1973097..1973639 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG54_RS09470 (KCG54_09505) pilO 1973655..1974326 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG54_RS09475 (KCG54_09510) pilN 1974326..1974949 (-) 624 WP_254324024.1 PilN domain-containing protein Machinery gene
  KCG54_RS09480 (KCG54_09515) pilM 1974954..1976045 (-) 1092 WP_039862505.1 type IV pilus assembly protein PilM -
  KCG54_RS09485 (KCG54_09520) - 1976199..1978592 (+) 2394 WP_254324025.1 penicillin-binding protein 1A -
  KCG54_RS09490 (KCG54_09525) - 1978658..1979494 (+) 837 WP_254324026.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23102.35 Da        Isoelectric Point: 4.7171

>NTDB_id=558050 KCG54_RS09475 WP_254324024.1 1974326..1974949(-) (pilN) [Neisseria subflava strain TT0077]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLGIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEVQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=558050 KCG54_RS09475 WP_254324024.1 1974326..1974949(-) (pilN) [Neisseria subflava strain TT0077]
ATGATCGAATTAACCAGAATCAACCTTCTCCCATATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGCGCTTTTGCAGTAGGTTTGGGCTTGGCGGCCGCTACCTATCTTGGTATTGACAGCGCCATCAGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATCGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCCAAAAAACTGAAAGTTGAAGAGTTACAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACACTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGTCCGACCAGCTATAAAATCAGCGGTC
ATGCCATCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTAAATACACCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGTTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536