Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KCG54_RS09465 Genome accession   NZ_CP073115
Coordinates   1973097..1973639 (-) Length   180 a.a.
NCBI ID   WP_003684527.1    Uniprot ID   A0A4D7WUN7
Organism   Neisseria subflava strain TT0077     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1968097..1978639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS09450 (KCG54_09485) aroB 1969199..1970278 (-) 1080 WP_254324022.1 3-dehydroquinate synthase -
  KCG54_RS09455 (KCG54_09490) - 1970301..1970813 (-) 513 WP_003684491.1 shikimate kinase -
  KCG54_RS09460 (KCG54_09495) pilQ 1970944..1973076 (-) 2133 WP_254324023.1 type IV pilus secretin PilQ Machinery gene
  KCG54_RS09465 (KCG54_09500) pilP 1973097..1973639 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG54_RS09470 (KCG54_09505) pilO 1973655..1974326 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG54_RS09475 (KCG54_09510) pilN 1974326..1974949 (-) 624 WP_254324024.1 PilN domain-containing protein Machinery gene
  KCG54_RS09480 (KCG54_09515) pilM 1974954..1976045 (-) 1092 WP_039862505.1 type IV pilus assembly protein PilM -
  KCG54_RS09485 (KCG54_09520) - 1976199..1978592 (+) 2394 WP_254324025.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20019.51 Da        Isoelectric Point: 5.3039

>NTDB_id=558049 KCG54_RS09465 WP_003684527.1 1973097..1973639(-) (pilP) [Neisseria subflava strain TT0077]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=558049 KCG54_RS09465 WP_003684527.1 1973097..1973639(-) (pilP) [Neisseria subflava strain TT0077]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCTAAACCGTATAGCC
CGCCGAACTTTAAAGGCATGAATGCGTTTGATTCCCGCCGTTTGGATACCGCCCCTAAAGGCGGTAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAATATGGCCTTTGTCGGAACGCTGCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAGGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCTTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCGGATTCTTCCAATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WUN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572