Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG52_RS06950 Genome accession   NZ_CP073114
Coordinates   1451878..1452165 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain HP0048     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446878..1457165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS06950 (KCG52_06930) comE 1451878..1452165 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS06955 (KCG52_06935) comP 1452428..1452841 (+) 414 WP_254345511.1 type IV pilin protein Machinery gene
  KCG52_RS06960 (KCG52_06940) uvrB 1453102..1455129 (+) 2028 WP_254343491.1 excinuclease ABC subunit UvrB -
  KCG52_RS06965 (KCG52_06945) - 1455266..1456858 (+) 1593 WP_254343492.1 funZ protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=558003 KCG52_RS06950 WP_036472233.1 1451878..1452165(+) (comE) [Neisseria subflava strain HP0048]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558003 KCG52_RS06950 WP_036472233.1 1451878..1452165(+) (comE) [Neisseria subflava strain HP0048]
ATGAAGAAATTTTTATTTGGTGCATTTGCTGCCGTGTGTGCAGCGTTCTCTTTGGCCGCTGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4