Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG52_RS06955 Genome accession   NZ_CP073114
Coordinates   1452428..1452841 (+) Length   137 a.a.
NCBI ID   WP_254345511.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447428..1457841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS06950 (KCG52_06930) comE 1451878..1452165 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS06955 (KCG52_06935) comP 1452428..1452841 (+) 414 WP_254345511.1 type IV pilin protein Machinery gene
  KCG52_RS06960 (KCG52_06940) uvrB 1453102..1455129 (+) 2028 WP_254343491.1 excinuclease ABC subunit UvrB -
  KCG52_RS06965 (KCG52_06945) - 1455266..1456858 (+) 1593 WP_254343492.1 funZ protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14894.28 Da        Isoelectric Point: 9.6318

>NTDB_id=558004 KCG52_RS06955 WP_254345511.1 1452428..1452841(+) (comP) [Neisseria subflava strain HP0048]
MLLASILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECKPFGA

Nucleotide


Download         Length: 414 bp        

>NTDB_id=558004 KCG52_RS06955 WP_254345511.1 1452428..1452841(+) (comP) [Neisseria subflava strain HP0048]
ATGCTGTTGGCTTCGATATTGGCAACGGCGGCATTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGC
GCATGCTGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGTTACCGGTCAAGGAGGCGGGCGGTTTCTGCATTCGGATGAGCGGCCAGGCTAAGGGTATCTTGGAGGGG
AAGTTTACTTTGAAGGCGGTGGCACTAGACAGGGAGGCGGAGCCGAGGGTATTGCGCTTGAACGAGTCGTTAACGGCGGT
GGTGTGCGGAAAGATGAAGGGGAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAAC
CATTTGGCGCATAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

97.037

98.54

0.956
  comP Neisseria meningitidis 8013

51.111

98.54

0.504
  comP Neisseria gonorrhoeae MS11

51.128

97.08

0.496