Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCX70_RS02180 Genome accession   NZ_CP073105
Coordinates   450678..452177 (-) Length   499 a.a.
NCBI ID   WP_212619144.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain F2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445678..457177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS02170 (KCX70_02170) - 446836..448479 (+) 1644 WP_212620276.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KCX70_RS02175 (KCX70_02175) betT 448512..450482 (-) 1971 WP_021207153.1 choline BCCT transporter BetT -
  KCX70_RS02180 (KCX70_02180) comM 450678..452177 (-) 1500 WP_212619144.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCX70_RS02185 (KCX70_02185) - 452208..452468 (-) 261 WP_212619145.1 accessory factor UbiK family protein -
  KCX70_RS02190 (KCX70_02190) glnK 452866..453204 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  KCX70_RS02195 (KCX70_02195) - 453326..454642 (+) 1317 WP_212619146.1 ammonium transporter -
  KCX70_RS02200 (KCX70_02200) - 454723..455976 (+) 1254 WP_212619147.1 ammonium transporter -
  KCX70_RS02205 (KCX70_02205) - 456075..456500 (+) 426 WP_021207148.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KCX70_RS02210 (KCX70_02210) sutA 456575..456913 (+) 339 WP_021207147.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52960.92 Da        Isoelectric Point: 8.0841

>NTDB_id=557935 KCX70_RS02180 WP_212619144.1 450678..452177(-) (comM) [Stutzerimonas stutzeri strain F2]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASAQIPGDRLESLECLGELALSGALRPVQGVLPAALAARKAGRALLVPRANAEEASLASGLVVYAADHL
LEVAAHFNGATPIEPFQAQGLLRQVLPYPDLAEVQGQAAAKRGLLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIHSVASQSPLEHWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GCIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPDQIQRYRGKLSGPLLDRIDLHLTVAREATALNAPLAG
SETTVEVAAKVAEARRIQLQRQGCANAFLDLTGLRSHCQLQPEDQQWLERACERLGLSLRAAHRILKVARTLADLQQATS
IGRAHLAEALQYRPGSQAG

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=557935 KCX70_RS02180 WP_212619144.1 450678..452177(-) (comM) [Stutzerimonas stutzeri strain F2]
ATGTCCCTTGCAATCGTCCACAGCCGCGCTCAGGTCGGCGTGGAGGCGCCTGCCGTCACGGTCGAGGCGCATCTGGCCAA
CGGCCTGCCCTCGCTCGCTCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGTGTGCGCAGCGCGATTC
TGACCTCCGGCTTCGATTTTCCCGCCCGTCGCATCACGCTCAATCTCGCCCCGGCCGATCTGCCGAAAGACGGCGGTCGC
TTCGATCTCGCGATCGCCTTGGGCATTCTTGCCGCCAGTGCGCAAATCCCTGGTGACCGTCTGGAGAGTCTCGAATGCCT
CGGCGAGCTGGCACTCTCCGGAGCGTTGCGTCCGGTGCAAGGTGTATTGCCCGCTGCCTTGGCGGCGCGCAAGGCCGGAC
GCGCACTGCTGGTGCCCAGGGCCAATGCCGAGGAAGCCAGCCTGGCGTCCGGTCTGGTGGTCTACGCCGCGGATCACCTG
CTCGAGGTAGCCGCACACTTCAACGGAGCGACCCCGATCGAGCCCTTCCAGGCGCAGGGGCTGCTGCGCCAGGTGTTGCC
CTACCCCGACCTCGCCGAGGTTCAGGGGCAGGCGGCAGCCAAGCGCGGATTGCTGGTCGCTGCGGCCGGCGCCCACAACC
TGTTGTTCTCCGGCCCGCCAGGCACCGGCAAGACCCTTCTGGCCAGCCGCCTGCCCGGATTGTTGCCGCCTTTGGAAGAA
CAGGAGGCGCTGGAAGTCGCCGCCATTCATTCGGTCGCCAGCCAGTCACCGCTGGAGCACTGGCCGCAGCGGCCGTTTCG
TCAGCCCCATCACAGTGCATCGGGACCGGCACTGGTCGGCGGTGGTAGTCGACCGCGACCGGGCGAAATCACCTTGGCGC
ATCAGGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCGATCGCAAGGTGCTCGAGGTGCTTCGCGAGCCACTGGAATCG
GGATGCATCGTTATCGCCCGCGCGCGTGACAAGGTGCGCTTCCCGGCTCGCTTTCAGCTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGCTATCTGGGCGACCCCAGCGGGCGCTGCCGCTGCTCGCCAGACCAGATCCAGCGCTACCGCGGCAAGCTCT
CCGGTCCACTGCTCGATCGTATCGACCTGCACCTGACGGTCGCTCGCGAGGCGACGGCGCTGAACGCACCACTGGCGGGC
AGCGAAACCACCGTCGAGGTCGCTGCCAAGGTTGCCGAGGCGCGGCGCATCCAGCTACAGCGCCAAGGCTGCGCCAATGC
CTTCCTCGACCTCACCGGCCTGCGCAGTCATTGCCAGCTGCAACCGGAGGACCAGCAATGGCTGGAACGGGCCTGCGAGC
GCCTCGGACTGTCATTGCGCGCGGCGCATCGGATCCTGAAAGTCGCGCGAACGCTGGCGGATCTGCAGCAAGCGACCTCG
ATCGGTCGTGCGCACCTGGCCGAAGCCCTGCAGTACCGACCCGGAAGCCAGGCCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.172

99.198

0.567
  comM Vibrio cholerae strain A1552

57.056

99.399

0.567
  comM Haemophilus influenzae Rd KW20

54.98

100

0.553
  comM Glaesserella parasuis strain SC1401

55.11

100

0.551
  comM Legionella pneumophila str. Paris

50.403

99.399

0.501
  comM Legionella pneumophila strain ERS1305867

50.403

99.399

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.467