Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   INT76_RS06195 Genome accession   NZ_CP073084
Coordinates   1226086..1227030 (-) Length   314 a.a.
NCBI ID   WP_212569658.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1221086..1232030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS06170 (INT76_06170) - 1221114..1221398 (-) 285 WP_212569653.1 DUF4651 domain-containing protein -
  INT76_RS06175 (INT76_06175) pepA 1221574..1222644 (+) 1071 WP_212569654.1 glutamyl aminopeptidase -
  INT76_RS06180 (INT76_06180) - 1222681..1223922 (-) 1242 WP_212569655.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  INT76_RS06185 (INT76_06185) - 1223982..1224536 (-) 555 WP_212569656.1 folate family ECF transporter S component -
  INT76_RS06190 (INT76_06190) - 1224840..1226027 (-) 1188 WP_212569657.1 acetate kinase -
  INT76_RS06195 (INT76_06195) comYH 1226086..1227030 (-) 945 WP_212569658.1 class I SAM-dependent methyltransferase Machinery gene
  INT76_RS06200 (INT76_06200) comGG 1227105..1227524 (-) 420 WP_212569659.1 competence type IV pilus minor pilin ComGG -
  INT76_RS06205 (INT76_06205) comYF 1227502..1227936 (-) 435 WP_212573034.1 competence type IV pilus minor pilin ComGF Machinery gene
  INT76_RS06210 (INT76_06210) comYE 1227923..1228216 (-) 294 WP_212569660.1 competence type IV pilus minor pilin ComGE Machinery gene
  INT76_RS06215 (INT76_06215) comGD/cglD 1228188..1228616 (-) 429 WP_212573035.1 competence type IV pilus minor pilin ComGD Machinery gene
  INT76_RS06220 (INT76_06220) comGC/cglC 1228576..1228890 (-) 315 WP_212569661.1 competence type IV pilus major pilin ComGC Machinery gene
  INT76_RS06225 (INT76_06225) comYB 1228892..1229929 (-) 1038 WP_282960473.1 competence type IV pilus assembly protein ComGB Machinery gene
  INT76_RS06230 (INT76_06230) comGA/cglA/cilD 1229841..1230791 (-) 951 WP_212569662.1 competence type IV pilus ATPase ComGA Machinery gene
  INT76_RS06235 (INT76_06235) - 1230879..1231847 (+) 969 WP_212569663.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35561.70 Da        Isoelectric Point: 4.9070

>NTDB_id=557844 INT76_RS06195 WP_212569658.1 1226086..1227030(-) (comYH) [Streptococcus oriscaviae strain HKU75]
MNFEKIEQAYGLLLENVQTIQNLLVTNGYDALIEQNAAYLSAVHDHQVIEQNNQTLKKLKLTKEEWRRSFQFLFIKLNQT
EPLQYNHQFTPDSIGFILTFLLDHLLEKENITVLEIGSGTGNLAQTILNHSQKKLDYLGIEVDDLLIDLSASIADVMKAE
ISFAQGDAVRPQILKESDLILSDLPIGYYPDDSIASRYKVASSEEKTYAHHLLMEQSLKYLQQGGYAIFLAPNDLLTSPQ
SDLLKSWLQAEASIVAMIALPSNLFGAQSMAKSIFVLQKKTVQQQMPFVYPLQDLQDAQAMQDFTAKFKKWKQG

Nucleotide


Download         Length: 945 bp        

>NTDB_id=557844 INT76_RS06195 WP_212569658.1 1226086..1227030(-) (comYH) [Streptococcus oriscaviae strain HKU75]
ATGAATTTTGAAAAGATCGAACAGGCCTATGGCCTTTTATTAGAAAATGTGCAGACCATCCAGAACTTGCTTGTGACCAA
TGGCTACGATGCCTTGATTGAACAAAATGCAGCCTATTTGTCGGCTGTCCATGATCATCAAGTGATTGAACAGAACAATC
AGACCTTGAAGAAGTTGAAGTTAACCAAGGAAGAATGGCGGCGCAGTTTTCAGTTCCTATTTATCAAGCTCAATCAAACA
GAGCCCCTTCAATACAATCACCAGTTTACACCCGATAGTATCGGTTTTATTCTGACCTTTCTTTTGGATCATTTGCTTGA
AAAAGAAAATATAACCGTACTTGAAATTGGTTCTGGAACAGGCAATTTGGCCCAGACCATTCTCAACCATAGTCAGAAGA
AGCTGGATTATTTGGGGATTGAAGTGGATGACCTCTTGATTGATTTGTCGGCTAGTATCGCGGACGTGATGAAGGCTGAA
ATTAGTTTTGCACAAGGAGATGCGGTTCGCCCACAAATTCTGAAAGAAAGTGATCTTATTCTCAGTGACCTACCGATTGG
TTACTACCCAGATGACAGCATTGCCAGCCGCTACAAGGTGGCTAGCAGCGAGGAAAAGACCTACGCCCATCATCTACTGA
TGGAGCAATCGCTCAAGTATTTGCAACAAGGTGGGTACGCCATTTTTCTTGCTCCAAATGATTTATTGACCAGTCCGCAG
AGCGACCTGTTAAAGAGCTGGTTACAAGCAGAAGCCAGTATCGTTGCAATGATTGCCTTGCCGAGCAATTTGTTTGGAGC
CCAATCCATGGCCAAGTCGATTTTCGTCCTGCAAAAGAAAACGGTTCAACAGCAAATGCCGTTTGTCTATCCCTTACAGG
ATTTGCAGGATGCCCAAGCAATGCAGGATTTTACAGCTAAATTCAAAAAATGGAAACAAGGCTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

61.981

99.682

0.618
  comYH Streptococcus mutans UA140

61.981

99.682

0.618