Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   INT76_RS02795 Genome accession   NZ_CP073084
Coordinates   571787..572728 (-) Length   313 a.a.
NCBI ID   WP_212571959.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 566787..577728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS02770 (INT76_02770) prsA 567053..568018 (-) 966 WP_212571950.1 peptidylprolyl isomerase PrsA -
  INT76_RS02775 (INT76_02775) - 568080..568799 (-) 720 WP_212571952.1 O-methyltransferase -
  INT76_RS02780 (INT76_02780) - 568885..569436 (-) 552 WP_212571954.1 hypothetical protein -
  INT76_RS02785 (INT76_02785) - 569452..569913 (-) 462 WP_212571956.1 hypothetical protein -
  INT76_RS02790 (INT76_02790) pepF 569915..571717 (-) 1803 WP_212571957.1 oligoendopeptidase F Regulator
  INT76_RS02795 (INT76_02795) coiA 571787..572728 (-) 942 WP_212571959.1 competence protein CoiA family protein Machinery gene
  INT76_RS02800 (INT76_02800) - 572798..573028 (+) 231 WP_212571961.1 DUF4190 domain-containing protein -
  INT76_RS02805 (INT76_02805) - 573159..573578 (+) 420 WP_212571963.1 GNAT family protein -
  INT76_RS02810 (INT76_02810) metG 573703..575706 (-) 2004 WP_212571965.1 methionine--tRNA ligase -
  INT76_RS02815 (INT76_02815) - 575868..576737 (-) 870 WP_212571967.1 CPBP family intramembrane glutamic endopeptidase -

Sequence


Protein


Download         Length: 313 a.a.        Molecular weight: 36588.06 Da        Isoelectric Point: 9.4100

>NTDB_id=557826 INT76_RS02795 WP_212571959.1 571787..572728(-) (coiA) [Streptococcus oriscaviae strain HKU75]
MLVAMNEKKQIINLLENTAPQGSFCCPGCGGAVRLKKRKIMRPHFAHISLKDCAYYSENESDQHLMLKSSLYSWLNAHDE
VELEKCLPDLGQVADLLVNHRLALEVQCSSLSISRLQARTKSYQEAGVQVLWLLGKELWLGKRLTKLQEQFLSFSYNMGF
YLWELDDKKNELRLHYLIHQDLRGRLQYVTKRFPFHQGRLLTILRSPYAQQRPASFEGRQDRTIASYIARQLKYRNPYWM
QLQAVAYAQGENLLSKSVTDFYPQIRLPQSEHGFAQIHQDLAPVYQAFEDFYQQQKNKDQQVLVPPSVYLNRK

Nucleotide


Download         Length: 942 bp        

>NTDB_id=557826 INT76_RS02795 WP_212571959.1 571787..572728(-) (coiA) [Streptococcus oriscaviae strain HKU75]
ATGCTAGTAGCTATGAATGAGAAAAAACAGATTATCAATCTTTTGGAAAATACTGCGCCACAGGGCTCTTTTTGCTGTCC
GGGTTGCGGCGGTGCGGTGCGTTTGAAAAAGAGAAAGATTATGCGGCCGCATTTTGCCCACATCAGTCTGAAAGATTGTG
CCTATTATTCTGAGAATGAGTCGGACCAGCACCTGATGCTCAAATCTAGCTTGTATAGCTGGCTGAACGCTCACGATGAG
GTTGAGCTTGAAAAGTGCTTGCCGGACTTGGGGCAGGTTGCCGATTTGCTGGTCAATCATCGTTTGGCATTGGAAGTTCA
GTGTTCTAGTCTGTCCATTTCACGTTTGCAGGCACGAACGAAATCCTATCAAGAGGCGGGGGTTCAAGTTCTCTGGCTTC
TCGGTAAGGAACTTTGGTTAGGCAAGCGGTTGACCAAGCTACAGGAGCAATTTCTTTCATTTAGCTATAATATGGGCTTT
TATCTTTGGGAACTAGATGACAAAAAGAACGAGTTGCGGCTACATTATCTCATCCATCAAGACCTGCGTGGCAGGCTTCA
GTATGTGACCAAGCGTTTTCCTTTTCATCAAGGTAGGCTGTTGACGATTTTGCGCTCGCCCTACGCCCAACAAAGGCCTG
CTAGTTTTGAAGGGCGACAGGATAGGACTATTGCTTCCTATATTGCGCGGCAGCTCAAATACCGTAACCCTTATTGGATG
CAGTTGCAGGCGGTGGCTTATGCGCAAGGGGAAAATCTTCTGAGTAAATCAGTGACAGATTTTTATCCCCAGATTCGTCT
GCCCCAATCCGAACATGGCTTTGCCCAGATCCATCAGGACTTGGCTCCGGTTTATCAGGCCTTTGAAGACTTTTACCAGC
AACAAAAAAACAAAGATCAACAAGTGCTTGTACCTCCCAGTGTCTATCTCAATCGGAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.133

98.722

0.505

  coiA Streptococcus pneumoniae TIGR4

49.191

98.722

0.486

  coiA Streptococcus pneumoniae Rx1

49.191

98.722

0.486

  coiA Streptococcus pneumoniae D39

49.191

98.722

0.486

  coiA Streptococcus pneumoniae R6

49.191

98.722

0.486

  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428