Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KBU60_RS01885 Genome accession   NZ_CP073068
Coordinates   401152..401682 (+) Length   176 a.a.
NCBI ID   WP_140288107.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 396152..406682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS01875 (KBU60_01875) galU 399099..399971 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KBU60_RS01880 (KBU60_01880) qstR 400229..400873 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  KBU60_RS01885 (KBU60_01885) ssb 401152..401682 (+) 531 WP_140288107.1 single-stranded DNA-binding protein Machinery gene
  KBU60_RS01890 (KBU60_01890) csrD 401923..403932 (+) 2010 WP_025541503.1 RNase E specificity factor CsrD -
  KBU60_RS01895 (KBU60_01895) - 403944..405389 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  KBU60_RS01900 (KBU60_01900) gspM 405386..406036 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  KBU60_RS01905 (KBU60_01905) - 406029..406358 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19536.59 Da        Isoelectric Point: 4.9269

>NTDB_id=557641 KBU60_RS01885 WP_140288107.1 401152..401682(+) (ssb) [Vibrio parahaemolyticus strain FB-11]
MASRGINKVILVGNLGSDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=557641 KBU60_RS01885 WP_140288107.1 401152..401682(+) (ssb) [Vibrio parahaemolyticus strain FB-11]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAGCGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTCGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGACAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.608
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483