Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KBU60_RS01880 Genome accession   NZ_CP073068
Coordinates   400229..400873 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain FB-11     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 395229..405873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS01870 (KBU60_01870) uvrA 396139..398961 (-) 2823 WP_140288117.1 excinuclease ABC subunit UvrA -
  KBU60_RS01875 (KBU60_01875) galU 399099..399971 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KBU60_RS01880 (KBU60_01880) qstR 400229..400873 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  KBU60_RS01885 (KBU60_01885) ssb 401152..401682 (+) 531 WP_140288107.1 single-stranded DNA-binding protein Machinery gene
  KBU60_RS01890 (KBU60_01890) csrD 401923..403932 (+) 2010 WP_025541503.1 RNase E specificity factor CsrD -
  KBU60_RS01895 (KBU60_01895) - 403944..405389 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=557640 KBU60_RS01880 WP_005480993.1 400229..400873(-) (qstR) [Vibrio parahaemolyticus strain FB-11]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=557640 KBU60_RS01880 WP_005480993.1 400229..400873(-) (qstR) [Vibrio parahaemolyticus strain FB-11]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACCCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523