Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   J7D36_RS01755 Genome accession   NZ_CP073060
Coordinates   371443..371925 (+) Length   160 a.a.
NCBI ID   WP_021510145.1    Uniprot ID   A0AAV3K5L7
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366443..376925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS01745 (J7D36_01745) pilX 366452..367270 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J7D36_RS19005 - 367282..367476 (+) 195 Protein_336 hypothetical protein -
  J7D36_RS01750 (J7D36_01750) pilY1 367585..371430 (+) 3846 WP_372535361.1 PilC/PilY family type IV pilus protein Machinery gene
  J7D36_RS01755 (J7D36_01755) pilY2 371443..371925 (+) 483 WP_021510145.1 type IV pilin protein Machinery gene
  J7D36_RS01760 (J7D36_01760) pilE 371922..372347 (+) 426 WP_021510144.1 type IV pilin protein Machinery gene
  J7D36_RS01765 (J7D36_01765) rpsP 372494..372745 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  J7D36_RS01770 (J7D36_01770) rimM 372765..373313 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  J7D36_RS01775 (J7D36_01775) trmD 373359..374099 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J7D36_RS01780 (J7D36_01780) rplS 374307..374675 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  J7D36_RS01785 (J7D36_01785) - 374727..375668 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  J7D36_RS01790 (J7D36_01790) - 375783..376817 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17475.72 Da        Isoelectric Point: 8.4801

>NTDB_id=557502 J7D36_RS01755 WP_021510145.1 371443..371925(+) (pilY2) [Acinetobacter baumannii strain DETAB-P39]
MNKYSILRFNQGVTLIELMVVIVIVSIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=557502 J7D36_RS01755 WP_021510145.1 371443..371925(+) (pilY2) [Acinetobacter baumannii strain DETAB-P39]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTCATGGTTGTTATAGTGATTGTTTCTAT
TTTTGCTTCGATCGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACGGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCTGAACAATTGGAACGGCATAAATCCAAGAACTTTACTTATAGGGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACAATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGACTCCAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.698

100

0.438