Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   J7D36_RS01745 Genome accession   NZ_CP073060
Coordinates   366452..367270 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361452..372270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS01710 (J7D36_01710) - 362034..362164 (-) 131 Protein_328 hypothetical protein -
  J7D36_RS01715 (J7D36_01715) rpoZ 362203..362481 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J7D36_RS01720 (J7D36_01720) gmk 362554..363183 (-) 630 WP_000015937.1 guanylate kinase -
  J7D36_RS01725 (J7D36_01725) ispH 363306..364256 (+) 951 WP_021510150.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J7D36_RS01730 (J7D36_01730) fimU 364426..364899 (+) 474 WP_021510149.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J7D36_RS01735 (J7D36_01735) pilV 364893..365453 (+) 561 WP_086374083.1 type IV pilus modification protein PilV Machinery gene
  J7D36_RS01740 (J7D36_01740) pilW 365454..366455 (+) 1002 WP_021510147.1 PilW family protein Machinery gene
  J7D36_RS01745 (J7D36_01745) pilX 366452..367270 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J7D36_RS19005 - 367282..367476 (+) 195 Protein_336 hypothetical protein -
  J7D36_RS01750 (J7D36_01750) pilY1 367585..371430 (+) 3846 WP_372535361.1 PilC/PilY family type IV pilus protein Machinery gene
  J7D36_RS01755 (J7D36_01755) pilY2 371443..371925 (+) 483 WP_021510145.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=557500 J7D36_RS01745 WP_000149374.1 366452..367270(+) (pilX) [Acinetobacter baumannii strain DETAB-P39]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=557500 J7D36_RS01745 WP_000149374.1 366452..367270(+) (pilX) [Acinetobacter baumannii strain DETAB-P39]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTGCAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGGGCTGGCAGCGCTAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993