Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   J7D36_RS01750 Genome accession   NZ_CP073060
Coordinates   367585..371430 (+) Length   1281 a.a.
NCBI ID   WP_372535361.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362585..376430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS01725 (J7D36_01725) ispH 363306..364256 (+) 951 WP_021510150.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J7D36_RS01730 (J7D36_01730) fimU 364426..364899 (+) 474 WP_021510149.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J7D36_RS01735 (J7D36_01735) pilV 364893..365453 (+) 561 WP_086374083.1 type IV pilus modification protein PilV Machinery gene
  J7D36_RS01740 (J7D36_01740) pilW 365454..366455 (+) 1002 WP_021510147.1 PilW family protein Machinery gene
  J7D36_RS01745 (J7D36_01745) pilX 366452..367270 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J7D36_RS19005 - 367282..367476 (+) 195 Protein_336 hypothetical protein -
  J7D36_RS01750 (J7D36_01750) pilY1 367585..371430 (+) 3846 WP_372535361.1 PilC/PilY family type IV pilus protein Machinery gene
  J7D36_RS01755 (J7D36_01755) pilY2 371443..371925 (+) 483 WP_021510145.1 type IV pilin protein Machinery gene
  J7D36_RS01760 (J7D36_01760) pilE 371922..372347 (+) 426 WP_021510144.1 type IV pilin protein Machinery gene
  J7D36_RS01765 (J7D36_01765) rpsP 372494..372745 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  J7D36_RS01770 (J7D36_01770) rimM 372765..373313 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  J7D36_RS01775 (J7D36_01775) trmD 373359..374099 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J7D36_RS01780 (J7D36_01780) rplS 374307..374675 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  J7D36_RS01785 (J7D36_01785) - 374727..375668 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 136936.32 Da        Isoelectric Point: 6.5665

>NTDB_id=557501 J7D36_RS01750 WP_372535361.1 367585..371430(+) (pilY1) [Acinetobacter baumannii strain DETAB-P39]
MAYSTSISSNYQRLKDKCYNPNKNADGTYSARTDSLKCYDRISRLKDGMFAFLDSNNSSLTNVRVGLGHYSVNGSGNAGK
ILVPAATLGATNSTQRNAIRTAVMGLTASGGTPTAAAYAEAAAYLMGTTTNAPVQIAVDVYRKEETRSISSYQCPGSYPY
LRTNVAPPLCYERYESWRSQPYRGNSTEAIPVYGPTITTYYRCDSLNATDFSNEIQTCRFNGWVSLGGTAPSNLAQDGYY
TDGNNTIYYKQEMQLGANSYSGFSSSISDSKKADLLSYASPLPAAADRVSCDGQGVYILSDGEPTNKTDSTLNSVMNASL
SSTNFDCAASGALNSTNDWHCMSNYAKRLFNGGVIQSIAANATNPVNVPIQTAFVGFGNDFTSLGSSDVVNACKLTSRTQ
TDRAGDDACSPNQGTNAIASPGYGNGGFFATQTPQGVTDSVIAFINNLGAAPLAPLTTGVISVPYDALNPKNLQEYGYLR
AFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVPLPIA
GQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAAPPEGTNPFDTVANTASYVLGKFDPS
TGQNILKAFPISLKLKILNYLGYSTDINATTLPPSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILYG
TMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVAAKQMN
IYGGMRMGGSSYYGLNVLNPAAPKLLFRVGADQTNYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNITLSN
SCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLNNNQT
KTNSTYSSFGIRVVRLANLATNDSTDDASNDYTAGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGREG
MSPSTALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSLS
STSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAGDPCLPRVVGETDRQTYCLPFGVCLNPDGTINSN
KEEPSGFQTNKTGSNCPAGVSECNENVIGTGIRGLAYVPKIDEPPVTNSCGKLQLAGNENGTGEWQCTSHLVPTRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=557501 J7D36_RS01750 WP_372535361.1 367585..371430(+) (pilY1) [Acinetobacter baumannii strain DETAB-P39]
GTGGCTTATTCGACTTCAATTTCGTCGAATTATCAAAGATTAAAGGACAAGTGTTATAATCCTAATAAAAATGCTGATGG
TACTTATAGCGCTCGAACAGATTCCTTGAAATGCTATGATCGAATATCAAGGCTAAAGGATGGTATGTTTGCATTTTTGG
ATAGTAATAACTCCAGCTTAACAAATGTCCGGGTGGGATTGGGTCATTATTCCGTCAATGGGTCAGGAAATGCAGGAAAG
ATATTAGTACCAGCCGCTACTCTTGGTGCTACTAATTCAACCCAAAGGAATGCTATACGTACAGCTGTGATGGGGCTGAC
TGCAAGTGGAGGAACACCTACAGCCGCTGCATATGCTGAAGCAGCTGCATATTTGATGGGAACAACAACTAACGCACCTG
TACAAATTGCAGTTGATGTTTATAGAAAGGAAGAAACAAGAAGTATAAGTAGTTATCAATGTCCTGGCAGCTATCCTTAT
TTGAGAACCAATGTGGCACCGCCGCTTTGCTATGAAAGATATGAGTCTTGGAGATCTCAACCATATCGAGGTAATAGTAC
CGAAGCTATACCAGTATATGGCCCTACTATAACTACTTACTATAGATGTGATAGCTTGAATGCTACAGATTTTAGTAATG
AAATACAGACTTGTCGTTTTAACGGTTGGGTTTCTTTAGGGGGAACGGCTCCATCTAATCTTGCTCAAGATGGTTATTAT
ACTGACGGAAACAATACTATTTATTACAAACAGGAAATGCAACTAGGAGCTAACTCGTATAGTGGTTTTAGTAGCTCTAT
TTCTGACTCTAAAAAAGCAGACTTACTTAGTTATGCCTCACCACTGCCAGCGGCTGCTGATCGAGTAAGTTGTGATGGTC
AAGGAGTTTATATTCTTTCTGATGGTGAGCCGACAAATAAGACTGATTCGACCCTTAATTCTGTTATGAATGCTAGTCTG
AGTAGTACGAATTTTGATTGCGCTGCATCAGGTGCACTAAATAGTACTAACGATTGGCATTGTATGAGTAACTATGCGAA
AAGACTTTTTAATGGCGGTGTAATCCAAAGCATAGCTGCTAATGCGACGAATCCTGTTAATGTTCCCATACAAACTGCTT
TTGTTGGTTTTGGTAATGACTTTACAAGTTTAGGATCTAGTGATGTCGTTAATGCATGTAAATTGACATCCCGAACTCAA
ACAGATCGCGCAGGTGATGATGCTTGTTCGCCGAATCAAGGAACAAACGCAATTGCTAGTCCTGGTTATGGTAATGGAGG
TTTTTTTGCAACGCAAACACCACAAGGTGTTACTGATAGTGTTATCGCATTTATTAATAACTTGGGTGCAGCACCTTTAG
CACCGTTAACAACAGGTGTGATCTCTGTTCCTTATGATGCTTTAAATCCTAAAAATTTACAGGAATATGGTTACTTACGT
GCTTTTGAGCCAAATCCGGCTAATACATACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCTGGAGC
GAATGCAGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGGACTGGAACAAAGGATT
ATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCTTTACCCATTGCT
GGACAACCTGAAACACGTGATGCAGAAGGAAATATCACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTTATT
TACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTCCAG
CTGCTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCATCA
ACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGATAT
TAATGCAACAACTCTGCCTCCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTTTAC
CGGTTCAACTAACTTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTATGGA
ACTATGGAAGGCGGATTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTTAAA
TGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGGATGGAGCTTGGG
TATCTGACCCAGCCTACAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAGCTGCAAAGCAAATGAAT
ATTTATGGAGGCATGCGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTGCACCTAAGCTTCTCTT
TAGAGTAGGAGCAGATCAAACTAATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAAATATACGTTATA
ACGGGGTTATTAAACGGGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATTACTTTGAGCAAC
TCTTGCTTTACTAATGGAAAAGCAAAAGGAAACGCTGTCTATATTATTGATGCCAAAACTGGGGAACGTTTATGGTGGAC
AAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCTTGGATCGAGATG
CTGATGGTTTGGTAGACCATTTATATTTCGGTGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAATAATAACCAGACA
AAAACGAATTCTACTTATAGTAGTTTTGGTATTCGAGTTGTGCGATTAGCCAATTTGGCAACAAATGACTCAACTGATGA
TGCCTCGAATGACTATACCGCTGGGAATGCGCCACGTTTTTATGAACCGCCAACAGTGACAATTCACGATTATGGAATTC
ACACTTTTATTACAGTAGGTATCGCATCAGGAGACCGTAGTACACCTTTAGACGTTTACCCACTTACAGGCCGTGAGGGG
ATGTCACCAAGCACAGCATTAAGCGGAAGACCTGTAAACAACGTTTATGGAATTATTGATAGAGACTTTGTTAAAAAGAA
CTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGTTTAAGAAAAAATCCACAAATTCTAA
GAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCAACTACAGGAGTAGGTAAAGGCGGTTGGTATCGCTCGCTTTCT
AGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTTAAAGCTTTTGAGGAACCGATGGC
AATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGGAGATCCTTGCTTACCCCGTG
TTGTGGGAGAAACAGACCGACAAACGTATTGTTTACCCTTTGGCGTTTGTCTTAATCCAGATGGAACTATTAATTCAAAT
AAAGAAGAGCCGAGTGGGTTTCAAACAAATAAAACTGGTAGTAACTGTCCAGCTGGAGTTTCTGAATGTAATGAAAATGT
TATTGGCACAGGTATTCGTGGCCTAGCATATGTTCCCAAAATAGATGAACCTCCTGTGACTAATAGTTGTGGCAAGTTAC
AATTGGCCGGAAACGAGAATGGAACGGGCGAGTGGCAGTGTACAAGTCATTTAGTTCCTACGCGTTGGTATGAGCGCTAT
CGCTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(711-960)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

76.349

98.361

0.751