Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   J7D36_RS01760 Genome accession   NZ_CP073060
Coordinates   371922..372347 (+) Length   141 a.a.
NCBI ID   WP_021510144.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366922..377347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS19005 - 367282..367476 (+) 195 Protein_336 hypothetical protein -
  J7D36_RS01750 (J7D36_01750) pilY1 367585..371430 (+) 3846 WP_372535361.1 PilC/PilY family type IV pilus protein Machinery gene
  J7D36_RS01755 (J7D36_01755) pilY2 371443..371925 (+) 483 WP_021510145.1 type IV pilin protein Machinery gene
  J7D36_RS01760 (J7D36_01760) pilE 371922..372347 (+) 426 WP_021510144.1 type IV pilin protein Machinery gene
  J7D36_RS01765 (J7D36_01765) rpsP 372494..372745 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  J7D36_RS01770 (J7D36_01770) rimM 372765..373313 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  J7D36_RS01775 (J7D36_01775) trmD 373359..374099 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J7D36_RS01780 (J7D36_01780) rplS 374307..374675 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  J7D36_RS01785 (J7D36_01785) - 374727..375668 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  J7D36_RS01790 (J7D36_01790) - 375783..376817 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15264.46 Da        Isoelectric Point: 7.8144

>NTDB_id=557503 J7D36_RS01760 WP_021510144.1 371922..372347(+) (pilE) [Acinetobacter baumannii strain DETAB-P39]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSNTTIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=557503 J7D36_RS01760 WP_021510144.1 371922..372347(+) (pilE) [Acinetobacter baumannii strain DETAB-P39]
ATGAAGAATGGTTTTACCCTGATAGAACTTATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCAAATACAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.872

100

0.979
  comF Acinetobacter baylyi ADP1

52.857

99.291

0.525