Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L1O95_RS02230 Genome accession   NZ_CP091020
Coordinates   459196..460320 (+) Length   374 a.a.
NCBI ID   WP_000228507.1    Uniprot ID   -
Organism   Escherichia coli strain STEC308     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 454196..465320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O95_RS02205 mscL 454322..454732 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  L1O95_RS02210 trkA 454862..456238 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  L1O95_RS02215 rsmB 456260..457549 (-) 1290 WP_001323790.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  L1O95_RS02220 fmt 457595..458542 (-) 948 WP_000004454.1 methionyl-tRNA formyltransferase -
  L1O95_RS02225 def 458557..459066 (-) 510 WP_000114984.1 peptide deformylase -
  L1O95_RS02230 dprA 459196..460320 (+) 1125 WP_000228507.1 DNA-protecting protein DprA Machinery gene
  L1O95_RS02235 smg 460292..460765 (+) 474 WP_000460672.1 DUF494 family protein Smg -
  L1O95_RS02240 yrdD 460794..461336 (+) 543 WP_001129719.1 type I DNA topoisomerase -
  L1O95_RS02245 tsaC 461341..461913 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  L1O95_RS02250 aroE 461918..462736 (+) 819 WP_000451239.1 shikimate dehydrogenase -
  L1O95_RS02255 yrdB 462733..462990 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  L1O95_RS02260 yrdA 462966..463520 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40991.98 Da        Isoelectric Point: 6.3837

>NTDB_id=557441 L1O95_RS02230 WP_000228507.1 459196..460320(+) (dprA) [Escherichia coli strain STEC308]
MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLVTTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=557441 L1O95_RS02230 WP_000228507.1 459196..460320(+) (dprA) [Escherichia coli strain STEC308]
ATGGTCGATACAGATATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGTGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGGTTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCTGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTGCCAGTCTGCT
TGAACATGGCGGAGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.652

100

0.447
  dprA Vibrio cholerae strain A1552

44.652

100

0.447
  dprA Haemophilus influenzae Rd KW20

45.401

90.107

0.409
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39