Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8N69_RS04285 Genome accession   NZ_CP073013
Coordinates   927165..928673 (-) Length   502 a.a.
NCBI ID   WP_168826801.1    Uniprot ID   A0A847RER3
Organism   Marinomonas profundi strain M1K-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 922165..933673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N69_RS04270 (J8N69_04255) - 923196..924125 (-) 930 WP_211085157.1 bile acid:sodium symporter family protein -
  J8N69_RS04275 (J8N69_04260) - 924288..925565 (-) 1278 WP_168826805.1 YbiU family protein -
  J8N69_RS04280 (J8N69_04265) - 925674..926801 (+) 1128 WP_168826803.1 ROK family transcriptional regulator -
  J8N69_RS04285 (J8N69_04270) comM 927165..928673 (-) 1509 WP_168826801.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8N69_RS04290 (J8N69_04275) - 928769..928990 (+) 222 WP_168826799.1 TIGR02450 family Trp-rich protein -
  J8N69_RS04295 (J8N69_04280) - 929009..929248 (-) 240 WP_168826797.1 accessory factor UbiK family protein -
  J8N69_RS04300 (J8N69_04285) glnK 929752..930090 (+) 339 WP_024023270.1 P-II family nitrogen regulator -
  J8N69_RS04305 (J8N69_04290) - 930130..931395 (+) 1266 WP_168826795.1 ammonium transporter -
  J8N69_RS04310 (J8N69_04295) - 931562..933091 (+) 1530 WP_168826793.1 carbon-nitrogen hydrolase family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54420.40 Da        Isoelectric Point: 7.5655

>NTDB_id=557359 J8N69_RS04285 WP_168826801.1 927165..928673(-) (comM) [Marinomonas profundi strain M1K-6]
MSLATIYSRARVGVSSPLVTVETHISNGLPSLNIVGLPEAAVREAKDRVRSAIINSHFEFPTRRVTINLAPADLPKEGGR
YDLAIAISVLAASGQLGELNLRDMEFIGELALSGDIRGVPGLLPSAIACHHASRQLILPEDNQQEAALVEGDAVFAKHLT
QVTAHLLNLSKLPACVSKPAEPLPLDHKDMRDVKGQYQARRALEVAAAGGHNLLFIGPAGTGKTMLASRLPSIMPAMTEA
EALAVASVQSVAGRKMGLDWYWSERPFRSPHHSCSAAALVGGGSIPKPGEASLAHCGVLFLDELPEFDRKVLEVLREPLE
NGEVHISRARGQVTFPARFQLVAAMNASNEAYNGGQDYYQSSASQKYLKKLSAPFLDRIDLHVEVPPLPSDVLVNAQEEG
ECSASVRERVERAVARQRARQGVQNALLSGRQLEGICALSDDDKQFMQQALEKLKLSARAYHRVLKVALTLADLNDSLVT
RAHLMESLSYRKMEKTLKSIVS

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=557359 J8N69_RS04285 WP_168826801.1 927165..928673(-) (comM) [Marinomonas profundi strain M1K-6]
ATGAGTTTAGCCACAATCTACAGCCGTGCCCGTGTTGGCGTATCTTCCCCTTTAGTGACAGTAGAAACCCACATCTCCAA
CGGATTACCTTCTTTAAATATCGTCGGTTTACCTGAAGCCGCCGTGCGTGAAGCCAAAGACCGCGTACGCAGCGCGATCA
TCAACAGTCATTTTGAATTTCCCACCCGCAGAGTCACCATCAACCTCGCGCCCGCGGATTTGCCCAAAGAAGGTGGGCGT
TATGACCTAGCCATTGCTATTAGTGTATTGGCCGCATCGGGACAGCTGGGCGAATTGAATCTACGCGATATGGAATTTAT
TGGTGAGCTGGCCTTATCGGGCGATATTCGAGGGGTGCCGGGTTTATTGCCATCGGCGATTGCGTGTCATCATGCCAGCC
GACAATTGATTCTTCCCGAAGATAACCAACAAGAAGCGGCGTTGGTGGAAGGCGACGCGGTGTTTGCCAAGCATCTTACT
CAAGTCACGGCTCATCTACTAAACTTAAGTAAGTTGCCAGCGTGTGTGTCAAAACCCGCTGAGCCCTTGCCGTTAGACCA
TAAAGACATGCGCGATGTTAAAGGCCAATATCAAGCGAGGCGCGCCTTGGAAGTCGCCGCTGCGGGTGGTCATAACCTGC
TATTTATTGGCCCGGCTGGCACAGGTAAAACCATGTTAGCATCCCGTTTGCCTAGCATTATGCCCGCCATGACAGAAGCC
GAAGCGCTGGCGGTGGCGTCGGTGCAATCGGTAGCGGGGCGAAAAATGGGCCTCGACTGGTATTGGTCTGAACGTCCTTT
TCGGTCGCCGCACCACTCTTGTTCGGCGGCGGCGTTAGTTGGTGGCGGTTCCATTCCTAAGCCGGGTGAAGCCTCGTTGG
CCCATTGTGGTGTGTTATTTCTGGATGAATTGCCTGAATTTGACCGCAAGGTATTAGAAGTACTGCGTGAACCCTTAGAA
AACGGCGAAGTGCATATTTCCCGTGCGCGCGGGCAAGTCACTTTTCCAGCGCGCTTTCAGCTGGTTGCCGCAATGAACGC
CAGCAACGAAGCCTATAATGGCGGACAAGATTATTATCAATCCAGCGCCAGCCAAAAATACCTCAAAAAACTCTCAGCAC
CGTTTTTGGATCGTATCGACTTGCATGTGGAAGTGCCACCTTTGCCGTCTGATGTGTTAGTCAATGCGCAGGAAGAAGGG
GAGTGCAGCGCCAGCGTTCGGGAGCGCGTGGAAAGAGCCGTGGCACGACAAAGAGCAAGACAAGGTGTGCAAAACGCCTT
GTTAAGTGGTCGTCAATTAGAAGGTATATGTGCGTTAAGCGACGACGACAAGCAATTTATGCAGCAAGCCTTGGAGAAAC
TAAAACTCTCCGCTCGTGCCTATCATCGAGTGTTAAAAGTGGCACTCACCTTGGCGGATCTCAACGACTCACTCGTCACC
CGAGCGCATTTAATGGAATCGTTAAGCTACCGGAAAATGGAAAAAACACTCAAATCCATAGTGTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A847RER3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.479

100

0.536
  comM Glaesserella parasuis strain SC1401

52.663

100

0.532
  comM Vibrio campbellii strain DS40M4

52.475

100

0.528
  comM Haemophilus influenzae Rd KW20

52.071

100

0.526
  comM Legionella pneumophila str. Paris

47.495

99.402

0.472
  comM Legionella pneumophila strain ERS1305867

47.495

99.402

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.664

100

0.44