Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SK40_RS11750 Genome accession   NZ_CP073007
Coordinates   2465113..2466633 (+) Length   506 a.a.
NCBI ID   WP_048227384.1    Uniprot ID   -
Organism   Citrobacter sp. BIDMC108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2460113..2471633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK40_RS11730 - 2461669..2462598 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  SK40_RS11735 ilvM 2462616..2462879 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  SK40_RS11740 ilvG 2462876..2464522 (-) 1647 WP_048227383.1 acetolactate synthase 2 catalytic subunit -
  SK40_RS11745 ilvL 2464662..2464760 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SK40_RS11750 comM 2465113..2466633 (+) 1521 WP_048227384.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SK40_RS11755 maoP 2466658..2466996 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  SK40_RS11760 hdfR 2467103..2467948 (+) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55124.13 Da        Isoelectric Point: 7.6396

>NTDB_id=557261 SK40_RS11750 WP_048227384.1 2465113..2466633(+) (comM) [Citrobacter sp. BIDMC108]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASKQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVIAARERQYRRQNKLNAQLDSQDIHKYCPLRSDDAQWLEETLAHLGLFIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=557261 SK40_RS11750 WP_048227384.1 2465113..2466633(+) (comM) [Citrobacter sp. BIDMC108]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCTCGCGATCGAGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCGTCTAAGCAGCTTACAACCCATAACCTCGATACATACGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGTGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCACATCACAGTGCTTCATTAACTGCCATGGTCGGTGGCGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACACTACGCTACCTCAATCGATTATCAGGCC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATAGCAGCACGAGAGCGTCAGTATCGGCGGCAGAATAAGTTAAATGCGCA
ACTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATTCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATA
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Vibrio campbellii strain DS40M4

57.937

99.605

0.577
  comM Haemophilus influenzae Rd KW20

57.255

100

0.577
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

99.605

0.425