Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KBV71_RS19950 Genome accession   NZ_CP072990
Coordinates   4613522..4615042 (-) Length   506 a.a.
NCBI ID   WP_003480498.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain CIX95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4612282..4621352 4613522..4615042 within 0


Gene organization within MGE regions


Location: 4612282..4621352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBV71_RS19945 (KBV71_19795) - 4612282..4613379 (+) 1098 WP_003480496.1 lipocalin-like domain-containing protein -
  KBV71_RS19950 (KBV71_19800) comM 4613522..4615042 (-) 1521 WP_003480498.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KBV71_RS19955 (KBV71_19805) - 4615056..4615325 (-) 270 WP_003480499.1 accessory factor UbiK family protein -
  KBV71_RS19960 (KBV71_19810) - 4615324..4615476 (+) 153 WP_155616458.1 hypothetical protein -
  KBV71_RS19965 (KBV71_19815) - 4615502..4615840 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  KBV71_RS19970 (KBV71_19820) speE 4616150..4617001 (-) 852 WP_003480505.1 polyamine aminopropyltransferase -
  KBV71_RS19975 (KBV71_19825) speA 4617245..4619134 (+) 1890 WP_058360257.1 arginine decarboxylase -
  KBV71_RS19980 (KBV71_19830) - 4619872..4620300 (+) 429 WP_242786416.1 condensation domain-containing protein -
  KBV71_RS19985 (KBV71_19835) - 4620387..4621352 (+) 966 WP_237649714.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53558.26 Da        Isoelectric Point: 8.5177

>NTDB_id=557192 KBV71_RS19950 WP_003480498.1 4613522..4615042(-) (comM) [Xanthomonas translucens pv. translucens strain CIX95]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQACTARTL
LEVCALLNGTKTLPAAEALPTAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIAYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=557192 KBV71_RS19950 WP_003480498.1 4613522..4615042(-) (comM) [Xanthomonas translucens pv. translucens strain CIX95]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAATCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATCGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCAGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTGCACTGCGCGCACCCTG
CTCGAAGTCTGCGCGCTTTTGAACGGCACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGACCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCAGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCAGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTATCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCGCGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCATCTGACCGAGGCGATCGCGTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.112

98.617

0.553
  comM Vibrio campbellii strain DS40M4

54.382

99.209

0.54
  comM Haemophilus influenzae Rd KW20

53.968

99.605

0.538
  comM Glaesserella parasuis strain SC1401

53.175

99.605

0.53
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447