Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KBQ49_RS17500 Genome accession   NZ_CP072988
Coordinates   4026315..4027835 (-) Length   506 a.a.
NCBI ID   WP_060748382.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain CIX43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4021315..4032835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBQ49_RS17485 (KBQ49_17395) - 4022694..4023527 (+) 834 WP_003480494.1 alpha/beta hydrolase -
  KBQ49_RS17490 (KBQ49_17400) - 4023931..4025019 (+) 1089 WP_229017781.1 lipocalin family protein -
  KBQ49_RS17495 (KBQ49_17405) - 4025075..4026172 (+) 1098 WP_003480496.1 lipocalin-like domain-containing protein -
  KBQ49_RS17500 (KBQ49_17410) comM 4026315..4027835 (-) 1521 WP_060748382.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KBQ49_RS17505 (KBQ49_17415) - 4027849..4028118 (-) 270 WP_003480499.1 accessory factor UbiK family protein -
  KBQ49_RS17510 (KBQ49_17420) - 4028117..4028269 (+) 153 WP_155616458.1 hypothetical protein -
  KBQ49_RS17515 (KBQ49_17425) - 4028295..4028633 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  KBQ49_RS17520 (KBQ49_17430) speE 4028943..4029794 (-) 852 WP_060748381.1 polyamine aminopropyltransferase -
  KBQ49_RS17525 (KBQ49_17435) speA 4030038..4031927 (+) 1890 WP_242733055.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53620.33 Da        Isoelectric Point: 8.6023

>NTDB_id=557176 KBQ49_RS17500 WP_060748382.1 4026315..4027835(-) (comM) [Xanthomonas translucens pv. translucens strain CIX43]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTM
LEVCALLNGTKTLPAAEALPTAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIAYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=557176 KBQ49_RS17500 WP_060748382.1 4026315..4027835(-) (comM) [Xanthomonas translucens pv. translucens strain CIX43]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCTGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATAACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATTGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCCGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCACTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCATG
CTCGAAGTCTGCGCGCTGTTGAACGGCACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGACCGCGGCCACGCCGTTTCC
CGACCTGAGCGATGTGCGCGGGCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCAGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTATCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCGCGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCATCTGACCGAGGCGATCGCGTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

98.617

0.551
  comM Vibrio campbellii strain DS40M4

54.183

99.209

0.538
  comM Haemophilus influenzae Rd KW20

53.77

99.605

0.536
  comM Glaesserella parasuis strain SC1401

52.976

99.605

0.528
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447