Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KAQ61_RS17295 Genome accession   NZ_CP072916
Coordinates   3690397..3691935 (-) Length   512 a.a.
NCBI ID   WP_210929968.1    Uniprot ID   -
Organism   Comamonas aquatica strain NEB418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3685397..3696935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAQ61_RS17265 (KAQ61_17265) - 3685474..3686250 (+) 777 WP_210929963.1 SDR family NAD(P)-dependent oxidoreductase -
  KAQ61_RS17270 (KAQ61_17270) - 3686262..3686861 (-) 600 WP_210929964.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  KAQ61_RS17275 (KAQ61_17275) - 3686858..3687322 (-) 465 WP_210929965.1 DUF4878 domain-containing protein -
  KAQ61_RS17280 (KAQ61_17280) - 3687478..3688077 (-) 600 WP_210929966.1 glutathione S-transferase family protein -
  KAQ61_RS17285 (KAQ61_17285) - 3688124..3689341 (-) 1218 WP_244982937.1 YbfB/YjiJ family MFS transporter -
  KAQ61_RS17290 (KAQ61_17290) - 3689418..3690335 (+) 918 WP_210929967.1 LysR family transcriptional regulator -
  KAQ61_RS17295 (KAQ61_17295) comM 3690397..3691935 (-) 1539 WP_210929968.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KAQ61_RS17300 (KAQ61_17300) - 3692142..3692480 (+) 339 WP_042411906.1 P-II family nitrogen regulator -
  KAQ61_RS17305 (KAQ61_17305) - 3692507..3693871 (+) 1365 WP_081888822.1 ammonium transporter -
  KAQ61_RS17310 (KAQ61_17310) glcE 3694132..3695244 (+) 1113 WP_210929969.1 glycolate oxidase subunit GlcE -
  KAQ61_RS17315 (KAQ61_17315) glcF 3695300..3696541 (+) 1242 WP_210929970.1 glycolate oxidase subunit GlcF -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54213.11 Da        Isoelectric Point: 8.0590

>NTDB_id=556876 KAQ61_RS17295 WP_210929968.1 3690397..3691935(-) (comM) [Comamonas aquatica strain NEB418]
MSLACVQSRALLGLQAPAVTVEVHLANGLPSLALVGLADVEVKEARERVRCAIVNSGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLHGWEFAGELSLSGELRPVRGALATSLALPWGQTPARLVLPLDSAAEAACAPQAEVYGA
AHLLDVVAQLLPPGATPHDRASTGWQRMLPPPRQAPRVLLDLAEVKGQVQAKRALEIAAAGSHAVLLVGPPGSGKSMLAH
RFAGLLPPMTEQEAVESAAIASLCGRFQATQWGQRRTAHPHHTASAVALVGGGSPPKPGEISLAHHGTLFLDEFPEFSRS
ALEALREPLETGCITIARATHSAEFPARFQLIAAMNPCPCGFWGSAQRNCRCTPDQVARYQGKLSGPLLDRIDLHVEVHS
LPAEQLLASTEGERSQAVQARVAQARARALQRQGCSNQLLQGDALEQHLQLEDSAAALVRKAADRLGWSARATHRALRVA
RTIADLAGSPHIASAHVAEAMQYRRTLVPASP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=556876 KAQ61_RS17295 WP_210929968.1 3690397..3691935(-) (comM) [Comamonas aquatica strain NEB418]
ATGAGCCTGGCTTGCGTCCAAAGTCGTGCCCTTTTGGGGCTGCAAGCGCCCGCCGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCCTGGCCCTGGTGGGGCTGGCCGACGTGGAGGTCAAGGAAGCCCGCGAGCGCGTGCGCTGCGCCATCG
TCAACAGCGGCCTGGAATTTCCAACCAACAAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTGGCCGCCAGCGGGCAGATCGATGCGGCGCGGCTCCACGGCTGGGAGTT
CGCGGGCGAGCTGTCGCTGTCCGGCGAGCTGCGCCCGGTGCGCGGGGCCCTGGCCACCAGCCTGGCCCTGCCCTGGGGCC
AGACCCCGGCACGCCTGGTGCTGCCGCTGGACAGCGCCGCCGAGGCGGCCTGCGCCCCGCAGGCCGAGGTCTATGGTGCC
GCCCACCTGCTGGATGTGGTGGCGCAACTGCTGCCCCCGGGTGCCACCCCGCATGACCGCGCCAGCACGGGCTGGCAGCG
CATGCTGCCGCCACCGCGCCAGGCGCCCCGGGTCCTGCTGGATCTGGCCGAGGTCAAGGGCCAGGTCCAGGCCAAGCGCG
CCCTGGAGATTGCCGCCGCCGGCAGCCATGCCGTGCTGCTGGTCGGCCCGCCCGGGTCGGGCAAGTCCATGCTGGCCCAC
CGGTTTGCCGGCCTCCTGCCGCCCATGACCGAGCAGGAAGCCGTCGAAAGCGCGGCCATCGCCAGCCTGTGCGGGCGCTT
CCAGGCCACGCAGTGGGGCCAGCGCCGCACCGCCCACCCACACCACACGGCCAGCGCTGTGGCCCTGGTCGGCGGGGGCT
CACCGCCCAAGCCCGGTGAGATCTCCCTGGCCCACCATGGCACGCTGTTCCTCGATGAATTCCCCGAATTCAGCCGCAGC
GCGCTGGAGGCCCTGCGCGAGCCACTGGAGACCGGCTGCATCACCATCGCCCGCGCCACGCACAGCGCGGAGTTCCCGGC
GCGCTTCCAGCTGATTGCGGCCATGAACCCCTGCCCCTGCGGCTTCTGGGGCAGTGCCCAGCGCAACTGCCGCTGCACGC
CCGACCAGGTGGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACGTCGAGGTGCACAGC
CTGCCGGCCGAGCAACTGCTGGCCAGCACCGAGGGCGAACGCAGCCAGGCCGTGCAGGCCCGCGTGGCCCAGGCGCGGGC
GCGGGCCCTGCAGCGCCAGGGCTGCAGCAACCAGCTGCTGCAGGGCGACGCGCTGGAGCAGCACCTGCAGCTGGAGGACA
GCGCCGCCGCCCTGGTGCGCAAGGCCGCCGACCGCCTGGGCTGGTCGGCCCGCGCCACCCACCGCGCGCTGCGCGTGGCG
CGCACCATCGCCGACCTGGCCGGCAGCCCCCACATCGCCAGCGCCCACGTGGCCGAGGCCATGCAGTACCGCCGCACCCT
GGTGCCCGCGAGTCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.791

98.828

0.502
  comM Vibrio campbellii strain DS40M4

49.902

99.805

0.498
  comM Haemophilus influenzae Rd KW20

48.728

99.805

0.486
  comM Glaesserella parasuis strain SC1401

48.915

99.023

0.484
  comM Legionella pneumophila str. Paris

48.337

99.805

0.482
  comM Legionella pneumophila strain ERS1305867

48.337

99.805

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.466

99.805

0.424