Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8L76_RS05155 Genome accession   NZ_CP072875
Coordinates   1125924..1127420 (-) Length   498 a.a.
NCBI ID   WP_216130699.1    Uniprot ID   A0A975SPW8
Organism   Azospira inquinata strain Azo-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1120924..1132420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8L76_RS05150 (J8L76_05150) - 1124581..1125786 (-) 1206 WP_216130697.1 multidrug effflux MFS transporter -
  J8L76_RS05155 (J8L76_05155) comM 1125924..1127420 (-) 1497 WP_216130699.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8L76_RS05160 (J8L76_05160) - 1127493..1127735 (-) 243 WP_216130701.1 accessory factor UbiK family protein -
  J8L76_RS05165 (J8L76_05165) - 1127978..1128781 (+) 804 WP_216130703.1 TorF family putative porin -
  J8L76_RS05170 (J8L76_05170) glnK 1128865..1129203 (+) 339 WP_216130705.1 P-II family nitrogen regulator -
  J8L76_RS05175 (J8L76_05175) - 1129217..1130734 (+) 1518 WP_216130707.1 ammonium transporter -
  J8L76_RS05180 (J8L76_05180) - 1130962..1131423 (-) 462 WP_216130709.1 GNAT family N-acetyltransferase -
  J8L76_RS05185 (J8L76_05185) - 1131423..1132028 (-) 606 WP_216130710.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52796.85 Da        Isoelectric Point: 8.1978

>NTDB_id=556486 J8L76_RS05155 WP_216130699.1 1125924..1127420(-) (comM) [Azospira inquinata strain Azo-2]
MPLALVHSRALAGMAAPPVTVEVHIANGLPAFSLVGLPEAEVREARDRVRAALLTSGADFPPRRITVNLAPADLPKESGR
FDLPIALGLLAASDQLPSAALEGYEFAGELSLSGDLRPVRGGLAMALAAGRAGRPLVLPRESAAEAAWARHTTLIPAATL
LEVCAHLRGDAPLLPLGAPPPVPPPPYPDLSDVKGQAGARRALEIAAAGGHSLLFCGPPGTGKSMLAQRLPGILPPLAEK
EALESATLLSLAGEFQPDRWTLAPWRHPHHTASPAALIGGGSKALPGEISLAHGGILFLDELPEFDRRVLEALREPLETG
AVQISRAAAKISYPARFQLIAAMNPCPCGFLGHPRRACRCTPDQVARYRGRLSGPLLDRLDLALDVPPLSPEELAAAPTG
ESSAPVQERVSRARRRQEARQGGLNAHLEGAALEQHCRPEKEAQALLARAVEQMQLSPRAYHRILRVARTIADLAGKDAL
EPAAVAEAIQYRRFDRAR

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=556486 J8L76_RS05155 WP_216130699.1 1125924..1127420(-) (comM) [Azospira inquinata strain Azo-2]
ATGCCTCTCGCCCTCGTTCACAGCCGCGCTTTAGCCGGAATGGCCGCTCCGCCGGTGACGGTGGAAGTCCATATCGCCAA
CGGCCTGCCCGCCTTTTCCCTGGTGGGCTTGCCCGAGGCCGAGGTGCGGGAAGCCCGGGATCGGGTACGGGCCGCCCTGC
TCACTAGCGGCGCCGATTTCCCGCCCCGGCGCATTACGGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAATCGGGCCGC
TTCGATCTGCCCATCGCCCTGGGCCTGCTAGCCGCTTCGGACCAATTGCCCAGCGCCGCCCTGGAAGGCTATGAATTTGC
GGGGGAACTGTCCCTGTCCGGCGACCTGCGCCCGGTACGGGGCGGACTCGCCATGGCCCTGGCCGCGGGGCGGGCCGGAC
GCCCCCTGGTGCTGCCCCGGGAAAGCGCGGCAGAAGCCGCCTGGGCCCGCCACACCACCCTGATCCCCGCCGCCACCCTT
CTGGAAGTCTGCGCCCATCTGCGGGGCGACGCCCCCCTTCTCCCCCTCGGCGCCCCGCCCCCCGTTCCGCCGCCCCCTTA
CCCGGATCTGTCGGACGTGAAAGGCCAGGCGGGGGCCCGCCGGGCCCTGGAAATCGCCGCCGCTGGCGGCCACTCCCTGC
TCTTCTGCGGCCCGCCGGGCACGGGCAAATCCATGCTCGCCCAGCGCCTACCGGGCATCCTGCCGCCCCTGGCAGAAAAG
GAAGCCCTGGAATCCGCCACCCTGCTGTCCTTAGCCGGGGAATTTCAGCCGGACCGCTGGACCCTGGCCCCCTGGCGCCA
TCCCCACCATACGGCTTCCCCCGCCGCCCTGATCGGGGGCGGCAGCAAAGCCCTGCCCGGGGAAATCTCCCTGGCCCACG
GGGGCATTTTATTTTTGGACGAGCTCCCTGAATTCGACCGCCGGGTACTGGAAGCCCTGCGGGAGCCCCTGGAAACCGGC
GCCGTGCAAATCTCCCGAGCCGCCGCCAAAATCAGCTATCCGGCCCGTTTCCAGCTCATCGCCGCCATGAATCCCTGTCC
CTGCGGCTTTCTCGGCCATCCCCGGCGAGCCTGCCGCTGCACCCCGGATCAGGTGGCCCGCTACCGGGGACGGCTCTCCG
GCCCCCTGCTGGACCGGCTCGATCTGGCCCTGGATGTGCCGCCCCTGAGCCCGGAGGAGCTGGCCGCCGCCCCCACCGGA
GAAAGCTCCGCCCCGGTGCAGGAACGGGTCAGCCGGGCCCGGCGCCGCCAGGAAGCGCGCCAGGGCGGCCTCAATGCCCA
TCTGGAAGGGGCGGCCCTGGAGCAGCACTGTCGTCCGGAAAAAGAGGCCCAAGCCCTGCTGGCCCGGGCGGTGGAGCAAA
TGCAGCTGTCGCCCCGGGCCTACCATCGTATACTGCGGGTAGCGCGCACCATCGCGGATTTGGCGGGCAAGGATGCGCTA
GAACCCGCCGCCGTGGCGGAAGCCATCCAATATCGGCGCTTCGACCGGGCCCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.305

100

0.524
  comM Haemophilus influenzae Rd KW20

50.397

100

0.51
  comM Glaesserella parasuis strain SC1401

50

100

0.506
  comM Legionella pneumophila str. Paris

48.795

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.444