Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8G15_RS12835 Genome accession   NZ_CP072852
Coordinates   2773966..2775504 (-) Length   512 a.a.
NCBI ID   WP_210542449.1    Uniprot ID   -
Organism   Rhodoferax sp. PAMC 29310 strain PAMC29310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2768966..2780504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G15_RS12820 metH 2769413..2772148 (+) 2736 WP_210542447.1 methionine synthase -
  J8G15_RS12825 - 2772161..2773390 (-) 1230 WP_240538267.1 MFS transporter -
  J8G15_RS12830 - 2773639..2773950 (+) 312 WP_210542448.1 hypothetical protein -
  J8G15_RS12835 comM 2773966..2775504 (-) 1539 WP_210542449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8G15_RS12840 glnK 2775757..2776095 (+) 339 WP_210542450.1 P-II family nitrogen regulator -
  J8G15_RS12845 - 2776129..2777553 (+) 1425 WP_210542451.1 ammonium transporter -
  J8G15_RS12850 - 2777673..2778533 (+) 861 WP_210542452.1 aldose 1-epimerase -
  J8G15_RS12855 - 2778530..2779471 (+) 942 WP_210542453.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53937.62 Da        Isoelectric Point: 8.2129

>NTDB_id=556412 J8G15_RS12835 WP_210542449.1 2773966..2775504(-) (comM) [Rhodoferax sp. PAMC 29310 strain PAMC29310]
MSLSLVQSRALLGLDAAAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSAIQNSGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGARLAGHEFAGELSLSGELRPVRGALAMSLALHAGGVQTRLVLPPESATEAALVPNAHVFEA
RHLLDVVQYFLPANPDVPAIDASAGWSRVTARTEMQAAHYPDMADVKGQPGARRALEIAAAGGHSLLLSGPPGSGKSMLA
QRFAGLLPAMTTTQALQCAAVASLGGRFALEKWGQRPTCSPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFPR
AALEALREPLESGLITISRAARRAEFPARFQLIGAMNPCPCGYLGSTQRACRCSPDQVSRYQGKLSGPLMDRIDLHVDVP
SVLASELLHAAPGEASAVIRERCTQARAGAVQRQGKSNHDLQGQEIDAYVLLDEAAAKFLNVAAARLGWSGRSTHRALKV
ARTIADLAGAQTTQVAHVAEAMQYRRASRANT

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=556412 J8G15_RS12835 WP_210542449.1 2773966..2775504(-) (comM) [Rhodoferax sp. PAMC 29310 strain PAMC29310]
ATGAGTCTTTCTTTGGTGCAAAGCCGTGCCCTATTGGGCCTAGATGCCGCAGCGGTGACAGTTGAAGTTCATCTGGCCAA
TGGTCTGCCTAGTTTTACTTTGGTGGGCTTGGCTGATGTTGAGGTCAAGGAGGCTCGCGAACGGGTTCGCTCGGCCATTC
AGAACTCGGGGTTGGAGTTTCCCCATAACAAACGCATCACAGTCAATCTCGCGCCAGCCGACTTACCCAAGGACTCAGGG
CGCTTTGATTTGCCGATCGCCCTGGGCATCTTGGCCGCCAGCGGGCAAATTGACGGCGCGCGGTTGGCGGGTCATGAGTT
CGCCGGCGAGTTGTCCTTGTCGGGCGAGTTGCGCCCCGTGAGGGGTGCGCTGGCCATGAGCCTCGCCTTGCATGCGGGCG
GGGTTCAGACCCGCCTTGTGTTGCCCCCCGAAAGCGCGACAGAAGCCGCCTTGGTGCCCAATGCCCACGTCTTTGAAGCC
CGCCATTTGCTTGACGTGGTTCAGTATTTCTTGCCCGCCAACCCGGATGTGCCGGCGATAGATGCCAGTGCTGGTTGGTC
GCGCGTGACGGCAAGAACCGAGATGCAAGCGGCTCATTACCCCGATATGGCTGACGTCAAAGGGCAGCCTGGCGCGCGGC
GCGCGCTGGAAATCGCGGCCGCTGGTGGCCACAGTTTGTTACTCAGTGGGCCGCCAGGCTCGGGCAAATCCATGCTCGCG
CAGCGTTTTGCAGGCCTGTTGCCGGCCATGACAACGACGCAAGCGCTGCAATGTGCGGCCGTGGCCTCGCTGGGCGGGCG
CTTTGCGCTGGAGAAGTGGGGCCAACGTCCGACGTGCAGTCCGCATCACACGGCCAGTGCGGTGGCCTTGGTGGGTGGCG
GGTCACCGCCCCGTCCGGGCGAAATTTCGCTGGCGCATCACGGGGTCTTGTTCCTGGACGAACTCCCAGAGTTTCCGCGG
GCGGCCTTGGAGGCTCTGCGTGAGCCGCTGGAGTCCGGTTTGATCACAATTTCGCGTGCGGCGCGGCGAGCTGAATTCCC
GGCACGCTTTCAGTTGATTGGCGCCATGAACCCCTGTCCCTGTGGCTATTTGGGGTCGACGCAAAGGGCTTGTCGCTGCT
CCCCTGATCAGGTTTCGCGCTATCAGGGCAAGTTGAGCGGTCCTTTGATGGACCGCATTGACCTGCATGTGGACGTGCCC
TCCGTTCTAGCCTCGGAGTTGCTACATGCGGCACCGGGCGAGGCCAGTGCCGTGATTCGCGAACGCTGCACACAGGCAAG
GGCAGGCGCTGTGCAACGCCAGGGCAAATCCAATCACGATCTGCAGGGGCAGGAAATTGATGCATACGTCTTGCTGGACG
AGGCTGCCGCAAAGTTCTTGAACGTGGCCGCCGCCCGATTGGGTTGGTCAGGGCGCAGCACACATCGGGCGTTGAAGGTC
GCGCGCACCATTGCCGACTTGGCAGGTGCTCAGACAACCCAGGTGGCCCATGTCGCCGAGGCCATGCAGTACCGCCGCGC
GTCTCGGGCCAATACCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50

100

0.504
  comM Haemophilus influenzae Rd KW20

50.294

99.805

0.502
  comM Vibrio campbellii strain DS40M4

49.902

99.805

0.498
  comM Legionella pneumophila strain ERS1305867

49.13

100

0.496
  comM Legionella pneumophila str. Paris

49.13

100

0.496
  comM Glaesserella parasuis strain SC1401

49.414

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.054

100

0.424