Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J9318_RS00790 Genome accession   NZ_CP072844
Coordinates   155630..157240 (+) Length   536 a.a.
NCBI ID   WP_210560617.1    Uniprot ID   -
Organism   Psychrosphaera aestuarii strain PSC101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150630..162240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9318_RS00780 - 151197..152840 (+) 1644 WP_210560615.1 M28 family metallopeptidase -
  J9318_RS00785 - 153086..155323 (-) 2238 WP_210560616.1 acyl-CoA dehydrogenase -
  J9318_RS00790 comM 155630..157240 (+) 1611 WP_210560617.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J9318_RS00795 - 157248..158228 (-) 981 WP_210560618.1 NAD-dependent epimerase/dehydratase family protein -
  J9318_RS00800 - 158306..160267 (-) 1962 WP_210560619.1 S9 family peptidase -
  J9318_RS00805 - 160452..160955 (+) 504 WP_210560620.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 58759.43 Da        Isoelectric Point: 7.8443

>NTDB_id=556143 J9318_RS00790 WP_210560617.1 155630..157240(+) (comM) [Psychrosphaera aestuarii strain PSC101]
MSLAIIFSRARIGIEAPIVTIEVHLSNGLPSFTIVGLPETTVRESKDRVRSAIINSGLEFPQRRITVNLAPADLPKEGGR
FDLAIAMGILAASKQISDKQLYQYEFLGELGLNGDIRPIVGEIPSALACLSANRTCILPQSNAIKATIIEKALLLSAHSL
FKVVEHFKGGDSLTTPEQDWSLDENLQNHGAHTSTLDMSDVIGQPMAKRALEIAAAGQHNLLFLGPPGTGKSMLARRLST
ILPPLTDEQALQSAAVNSISGKSFNFKHWRERPFRAPHHTSTAVALTGGGRPPRPGEISLAHHGVLFLDELPEFSRYTLD
ALREPLETGNICISRASLQVEFPAQFQLIAALNPSPTGHHMDGRCTSEQVLKYLSRISSPFLDRIDLQIEVPALPKGTLS
TMQSERLNEQGINTDAVTHDPMNNLDIRHDNQSESSASIACRVLAAREIMMKRAGKPNALLSSKETAIHCALSFQDSKFL
EDTLFRFKMSIRAYHKILKVARTIADLNGEAQIARSHIAEALGYRSMERLLRHLSL

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=556143 J9318_RS00790 WP_210560617.1 155630..157240(+) (comM) [Psychrosphaera aestuarii strain PSC101]
ATGTCTCTCGCAATCATATTTAGTCGGGCAAGAATTGGTATCGAAGCACCAATTGTTACTATTGAAGTGCATTTATCAAA
CGGATTACCTTCCTTTACTATTGTTGGATTACCTGAGACTACCGTTCGGGAGTCAAAAGACCGAGTCCGAAGTGCAATTA
TTAATTCAGGTCTAGAATTTCCACAGCGCCGCATTACCGTCAACTTGGCGCCCGCTGACTTACCAAAAGAAGGGGGACGC
TTCGACTTAGCAATCGCCATGGGAATCTTGGCAGCAAGCAAACAAATTTCCGATAAACAACTTTATCAATATGAATTTCT
TGGTGAACTTGGTTTAAACGGCGATATTAGGCCTATTGTTGGAGAAATACCCTCTGCCCTTGCCTGTTTATCGGCAAACC
GAACCTGTATATTGCCACAGAGCAATGCAATAAAAGCCACAATCATTGAAAAGGCTTTATTGCTGTCGGCCCACAGCCTT
TTTAAAGTGGTAGAACATTTTAAAGGTGGTGATTCGTTAACAACTCCAGAACAAGATTGGTCGTTAGATGAAAACCTACA
AAACCATGGTGCTCATACATCAACGCTAGATATGTCCGATGTCATTGGCCAACCTATGGCTAAACGCGCTTTAGAAATAG
CTGCTGCAGGTCAACATAACTTACTTTTTTTAGGACCACCAGGCACCGGTAAGTCTATGTTAGCAAGAAGATTAAGTACC
ATTTTACCGCCTCTAACCGACGAACAAGCTTTGCAATCCGCTGCGGTCAACTCTATTAGTGGTAAGTCTTTTAATTTTAA
GCATTGGCGGGAGCGACCGTTTCGAGCTCCGCATCACACATCTACTGCAGTCGCATTAACCGGAGGTGGAAGGCCACCAA
GGCCCGGCGAAATAAGCCTTGCCCATCACGGCGTTTTATTTCTAGATGAGCTTCCAGAATTTAGTCGATATACTTTAGAT
GCACTTCGTGAGCCTTTAGAAACTGGCAACATTTGTATTTCGAGGGCGTCGTTGCAAGTAGAATTTCCAGCGCAGTTTCA
GCTCATCGCAGCATTGAACCCAAGTCCAACAGGTCATCATATGGATGGACGATGTACATCGGAGCAAGTTTTAAAATACC
TGAGTCGAATTTCTAGTCCATTTTTAGATCGCATAGATCTTCAAATAGAAGTGCCCGCGTTACCAAAAGGCACTTTATCC
ACAATGCAATCTGAGCGATTGAACGAGCAAGGTATAAATACGGATGCTGTGACTCATGATCCTATGAATAATCTCGATAT
ACGTCACGACAACCAAAGTGAATCATCGGCGTCAATAGCATGTCGAGTTTTGGCTGCTCGGGAAATAATGATGAAACGTG
CTGGGAAACCAAACGCCTTATTATCGAGTAAAGAGACAGCAATTCATTGCGCCCTGTCATTCCAAGATTCCAAATTTTTA
GAGGACACTCTTTTTAGATTTAAGATGTCCATTCGCGCTTATCATAAAATATTAAAAGTGGCCCGAACCATTGCTGATTT
AAACGGTGAGGCCCAAATAGCGCGGTCACATATCGCTGAGGCGCTAGGCTATCGCTCTATGGAACGTTTACTACGACATT
TATCTCTATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(434-525)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.121

100

0.552
  comM Vibrio campbellii strain DS40M4

53.519

100

0.539
  comM Haemophilus influenzae Rd KW20

53.631

100

0.537
  comM Glaesserella parasuis strain SC1401

53.545

100

0.535
  comM Legionella pneumophila str. Paris

48.211

99.067

0.478
  comM Legionella pneumophila strain ERS1305867

48.211

99.067

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.596

100

0.407