Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D781_RS21295 Genome accession   NC_020064
Coordinates   4661835..4663355 (+) Length   506 a.a.
NCBI ID   WP_015962290.1    Uniprot ID   L0ML05
Organism   Serratia sp. FGI94     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4656835..4668355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D781_RS21275 (D781_4416) - 4657039..4657965 (-) 927 WP_015962285.1 branched-chain amino acid transaminase -
  D781_RS21280 (D781_4417) ilvM 4657986..4658252 (-) 267 WP_015962286.1 acetolactate synthase 2 small subunit -
  D781_RS21285 (D781_4418) ilvG 4658249..4659895 (-) 1647 WP_015962287.1 acetolactate synthase 2 catalytic subunit -
  D781_RS23115 (D781_4419) ilvL 4660038..4660136 (-) 99 WP_015962288.1 ilv operon leader peptide -
  D781_RS21290 (D781_4420) - 4660270..4661502 (-) 1233 WP_015962289.1 MFS transporter -
  D781_RS21295 (D781_4421) comM 4661835..4663355 (+) 1521 WP_015962290.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D781_RS21300 (D781_4422) - 4663381..4663719 (-) 339 WP_015962291.1 DUF413 domain-containing protein -
  D781_RS21305 (D781_4423) hdfR 4663840..4664667 (+) 828 WP_015962292.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54510.84 Da        Isoelectric Point: 8.5181

>NTDB_id=55611 D781_RS21295 WP_015962290.1 4661835..4663355(+) (comM) [Serratia sp. FGI94]
MSLAVIFTRATLGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALLNNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPADRLAEHEFLGELALSGALRAVSGAIPAAMAAQQDGRGLILPAENEGEVGLLPKEGTRVATHL
LAVCAFLLGQGELSLAQPPAAPPNDNRGDLQDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLTDQ
EALESVAVASLQHQPAGRLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRTLDALREPLES
GEIVISRASAKVCFPARIQLIAAMNPSPTGHYQGVHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGTLSKQQEPG
ESSQQVRQRVIAARERQLQRAGKINAILGKREVDRDCPLCDADAHYLETTLLKLGLSVRAWHRILKVARTLADLAGEKHI
ARHHLSEALGYRRMERLLIQLHRSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=55611 D781_RS21295 WP_015962290.1 4661835..4663355(+) (comM) [Serratia sp. FGI94]
ATGTCATTGGCGGTTATTTTCACTCGGGCTACGCTGGGCGTTCAGGCGCCGTCGGTGACGGTCGAAGTTCATATCAGCAA
CGGGTTGCCCGGATTAACGCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGGCGCGCGATCGGGTACGCAGCGCACTGC
TCAACAACGGTTTTACCTTTCCCGCGAAACGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGTGGCCGG
TACGATCTGCCGATCGCTCTGGCGATCCTCGCCGCTTCGGAGCAGATCCCGGCAGATCGGCTGGCTGAACACGAATTTCT
CGGCGAGCTGGCGCTGTCCGGCGCATTGCGCGCCGTCAGCGGCGCCATCCCCGCAGCAATGGCGGCGCAGCAGGATGGCA
GAGGGCTGATCCTGCCGGCAGAAAATGAAGGGGAAGTCGGCCTCCTGCCAAAAGAAGGAACGCGGGTTGCAACGCACCTG
TTGGCCGTCTGCGCCTTTCTGCTGGGCCAGGGTGAACTGTCGCTTGCCCAGCCTCCTGCCGCGCCGCCTAACGACAACCG
GGGGGACCTGCAGGATATTATCGGCCAGGAACAGGCCAAACGGGCGCTGGAGATTGCCGCCGCCGGTGGTCACAATCTGT
TGCTGCTCGGCCCGCCAGGCACCGGCAAAACCATGCTGGCAAGCCGCCTGCCGGGATTATTGCCGCCGCTAACCGACCAG
GAGGCGCTGGAGAGCGTTGCGGTTGCCAGCCTGCAGCATCAGCCCGCCGGCAGGCTGCCGTGGCGCCAGCGGCCATTCAG
GGCGCCGCACCACAGCGCATCCATGGCGGCACTGGTCGGCGGCGGCTCTCTGCCGCGTCCGGGGGAAATATCCATGGCGC
ACAACGGCGTGCTGTTCCTTGATGAACTCCCCGAATTTGAACGGCGTACGCTGGACGCCCTGCGCGAGCCTTTGGAATCC
GGGGAAATTGTCATTTCTCGCGCCAGCGCCAAAGTCTGCTTCCCGGCGCGGATTCAGCTGATCGCCGCCATGAATCCCAG
CCCGACCGGTCATTATCAGGGCGTGCATAACCGAACCCCGCCACAGCAGGTTCTGCGCTATCTGGGCCGACTTTCCGGGC
CATTTCTCGACCGGTTCGATTTATCGATTGAAGTCCCCTTGCTGCCGCCCGGTACGCTCAGCAAACAGCAGGAGCCGGGA
GAAAGCAGCCAGCAGGTGCGCCAGCGCGTAATCGCGGCGCGGGAACGGCAATTGCAGCGCGCCGGAAAAATTAATGCCAT
TCTCGGCAAACGCGAAGTGGATCGAGATTGCCCATTGTGCGATGCCGACGCCCACTATCTAGAAACAACCTTGCTTAAGC
TGGGATTATCCGTACGCGCCTGGCATCGCATCCTCAAGGTAGCACGCACGCTGGCGGATTTAGCGGGAGAAAAACATATT
GCCCGCCACCATCTCAGCGAAGCATTAGGCTACCGTCGGATGGAACGCCTGCTGATCCAGCTACATCGCAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0ML05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.613

100

0.656
  comM Vibrio cholerae strain A1552

65.936

99.209

0.654
  comM Glaesserella parasuis strain SC1401

64.694

100

0.648
  comM Vibrio campbellii strain DS40M4

64.94

99.209

0.644
  comM Legionella pneumophila str. Paris

49.407

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.455

Multiple sequence alignment