Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D781_RS20080 Genome accession   NC_020064
Coordinates   4401576..4402115 (-) Length   179 a.a.
NCBI ID   WP_015962066.1    Uniprot ID   -
Organism   Serratia sp. FGI94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4396576..4407115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D781_RS20050 (D781_4162) - 4397956..4398360 (-) 405 WP_015962060.1 VOC family protein -
  D781_RS20055 (D781_4163) - 4398407..4399075 (-) 669 WP_015962061.1 glutathione S-transferase -
  D781_RS20060 (D781_4164) - 4399072..4399515 (-) 444 WP_015962062.1 lipocalin-like domain-containing protein -
  D781_RS20065 (D781_4165) - 4399723..4399983 (+) 261 WP_015962063.1 YdgH/BhsA/McbA-like domain containing protein -
  D781_RS20070 (D781_4166) - 4400093..4400566 (-) 474 WP_015962064.1 Rrf2 family transcriptional regulator -
  D781_RS20075 (D781_4167) - 4400719..4401102 (+) 384 WP_015962065.1 hypothetical protein -
  D781_RS20080 (D781_4169) ssb 4401576..4402115 (-) 540 WP_015962066.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D781_RS20085 (D781_4170) uvrA 4402384..4405212 (+) 2829 WP_015962067.1 excinuclease ABC subunit UvrA -
  D781_RS20090 (D781_4171) - 4405432..4406484 (+) 1053 WP_015962068.1 NAD(P)-dependent alcohol dehydrogenase -
  D781_RS20095 (D781_4172) maa 4406507..4407064 (-) 558 WP_015962069.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18911.81 Da        Isoelectric Point: 5.2358

>NTDB_id=55609 D781_RS20080 WP_015962066.1 4401576..4402115(-) (ssb) [Serratia sp. FGI94]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGQDRYTTEVVVNVGGSMQMLGGRQGGGGAPAGGGQGGQGGWGQPQQPQGGNQFSGGQQQQSRPAPSS
APAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=55609 D781_RS20080 WP_015962066.1 4401576..4402115(-) (ssb) [Serratia sp. FGI94]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAACCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
TGGCGCGGTCGCCAACATGACCCTGGCTACCTCCGAAAGCTGGCGCGACAAGGCGACCGGCGAGCAGAAAGAAAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATTTGCGTAAAGGCTCGCAGGTGTATATC
GAAGGTTCTCTGCAGACCCGCAAATGGACCGATCAGAGCGGCCAGGATCGTTACACCACCGAAGTGGTGGTTAACGTCGG
CGGTTCCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGGCGCACCGGCAGGCGGTGGTCAGGGTGGCCAGGGCGGTT
GGGGCCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGCAGTCGCGTCCAGCGCCAAGCAGC
GCGCCGGCGGCCAGCAGCAACGAACCGCCAATGGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.863

100

0.765
  ssb Glaesserella parasuis strain SC1401

59.043

100

0.62
  ssb Neisseria meningitidis MC58

45.989

100

0.48
  ssb Neisseria gonorrhoeae MS11

45.989

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.288

98.883

0.369

Multiple sequence alignment