Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SMUNUM_RS10025 Genome accession   NZ_AP014571
Coordinates   2021364..2021957 (-) Length   197 a.a.
NCBI ID   WP_002266975.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2016364..2026957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS09995 - 2016628..2016840 (-) 213 WP_002262389.1 hypothetical protein -
  SMUNUM_RS10000 (SMNUM_1896) - 2016967..2017392 (-) 426 WP_002264551.1 hypothetical protein -
  SMUNUM_RS10005 (SMNUM_1897) spx 2017643..2018041 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  SMUNUM_RS10010 (SMNUM_1898) recA 2018126..2019277 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  SMUNUM_RS10015 (SMNUM_1899) cinA 2019317..2020573 (-) 1257 WP_002270966.1 competence/damage-inducible protein A Machinery gene
  SMUNUM_RS10020 (SMNUM_1900) - 2020722..2021282 (-) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  SMUNUM_RS10025 (SMNUM_1901) ruvA 2021364..2021957 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA Machinery gene
  SMUNUM_RS10030 (SMNUM_1902) hexB 2022144..2024099 (-) 1956 WP_019805529.1 DNA mismatch repair endonuclease MutL Machinery gene
  SMUNUM_RS10035 - 2024324..2024602 (+) 279 Protein_1926 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21866.09 Da        Isoelectric Point: 5.6313

>NTDB_id=55604 SMUNUM_RS10025 WP_002266975.1 2021364..2021957(-) (ruvA) [Streptococcus mutans LP13]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=55604 SMUNUM_RS10025 WP_002266975.1 2021364..2021957(-) (ruvA) [Streptococcus mutans LP13]
ATGTACGATTATATTAAAGGTAATTTAACCAAAATTACAGCTAAATATATTGTTTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.574

100

0.716
  ruvA Streptococcus pneumoniae D39

71.574

100

0.716
  ruvA Streptococcus pneumoniae TIGR4

71.574

100

0.716
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411

Multiple sequence alignment