Detailed information NTG0555581

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: J7U34_RS09235
• Genome accession: NZ_CP072778
• Coordinates: 1779534..1779962 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24748
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1774534..1784962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U34_RS09190 (J7U34_09140)	-	1774671..1775114 (-)	444	WP_011681680.1	hypothetical protein	-
J7U34_RS09195	-	1775188..1775526 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
J7U34_RS09200	-	1775570..1775845 (-)	276	WP_011681681.1	hypothetical protein	-
J7U34_RS09205 (J7U34_09150)	-	1775857..1776054 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
J7U34_RS09210 (J7U34_09155)	-	1776303..1777496 (-)	1194	WP_014608740.1	acetate kinase	-
J7U34_RS09215 (J7U34_09160)	comYH	1777552..1778508 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U34_RS09220 (J7U34_09165)	comGG	1778553..1778870 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
J7U34_RS09225 (J7U34_09170)	comYF	1778848..1779285 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U34_RS09230 (J7U34_09175)	comGE	1779269..1779562 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U34_RS09235 (J7U34_09180)	comYD	1779534..1779962 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U34_RS09240 (J7U34_09185)	comYC	1779922..1780248 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U34_RS09245 (J7U34_09190)	comYB	1780245..1781345 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U34_RS09250 (J7U34_09195)	comGA/cglA/cilD	1781227..1782168 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U34_RS09255 (J7U34_09200)	-	1782249..1782611 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=555581 J7U34_RS09235 WP_011226626.1 1779534..1779962(-) (comYD) [Streptococcus thermophilus strain S24748]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=555581 J7U34_RS09235 WP_011226626.1 1779534..1779962(-) (comYD) [Streptococcus thermophilus strain S24748]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38